Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00560X
         (391 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21755| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_3178| Best HMM Match : BofA (HMM E-Value=0.43)                      29   1.0  
SB_53815| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_4680| Best HMM Match : ATP_synt_H (HMM E-Value=7.7)                 29   1.0  
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   1.4  
SB_28368| Best HMM Match : Pentaxin (HMM E-Value=9.5e-11)              29   1.4  
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)             28   2.4  
SB_50600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)                26   9.5  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_21755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = -2

Query: 351 IVKESELLLRIPSLWLVTPNLLTSLLYILYNHTLYVIITLGRTGHGVTVHSCLSSVHPEE 172
           + K S LL   P+L  + P LLT+L  +L  HTL     LG+  H V V + L ++   +
Sbjct: 76  LAKHSALLTTYPTLLTIRPALLTTLTTVLATHTL-----LGK--HAVAVSNILRTLAASD 128

Query: 171 I 169
           I
Sbjct: 129 I 129


>SB_3178| Best HMM Match : BofA (HMM E-Value=0.43)
          Length = 264

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 273 YILYNHTLYVIITLGRTGHGVTVHSCLSSVH 181
           Y++Y  T+ VI+  G +G+G+T+  C    H
Sbjct: 23  YVMYYMTMLVILIAGISGNGITIVICRRPEH 53


>SB_53815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 219 APCVPVLL*HTMYDCIIYKVSL--*VGLE*PATXMEYAAGVQIPSLYL 356
           APC+PV     +Y  +  KV+L   + ++ P   + YA G+  P +YL
Sbjct: 288 APCIPVFTVTAIYSVVDTKVTLTESLAIDYPLALIVYANGLVNPIIYL 335


>SB_4680| Best HMM Match : ATP_synt_H (HMM E-Value=7.7)
          Length = 85

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 219 APCVPVLL*HTMYDCIIYKVSL--*VGLE*PATXMEYAAGVQIPSLYL 356
           APC+PV     +Y  +  KV+L   + ++ P   + YA G+  P +YL
Sbjct: 22  APCIPVFTVTAIYSVVDTKVTLTESLAIDYPLALIVYANGLVNPIIYL 69


>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = +1

Query: 82   NWVKKKEEK---AVLDFNEYSYILQ 147
            NW+KKKEEK    V+ FN++ ++ Q
Sbjct: 1521 NWIKKKEEKNNLKVVTFNDHDFLKQ 1545


>SB_28368| Best HMM Match : Pentaxin (HMM E-Value=9.5e-11)
          Length = 1160

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
 Frame = -2

Query: 348  VKESELLLRIPSLWLVTPNLLTSLLYILYNHTLYVIITLGRTGHGVTVHSCLSSVHPEEI 169
            +K+S L     SL     ++  S +  +Y+H    ++ +G    G T+ S L   HP  I
Sbjct: 838  MKKSSLKKTSTSLIQARKSIFGSSIAKVYDHVNTFVVFIGYPRSGHTLVSSLIDAHPHAI 897

Query: 168  LRD-----GPWML*NITILVEIQDRFFLFFFYPVSNIMDTRV*PATSMSSMYTY 22
            + +     G W+  N     E ++++FLF     ++  + +    +S+  M+ Y
Sbjct: 898  IANEFDIIGNWLAWN----DEQRNKYFLFDQLYKNSRTEAKTGLRSSVKHMFNY 947


>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
          Length = 950

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 334 TPAAYSIXVAGHSKPTHKLTLYIIQSYIVCYNNT-GTHGARGYSSLLSI 191
           T  A ++ + GH    H +TL ++ +   C N   G HG+  ++  L I
Sbjct: 217 TRHAVTLCIGGHGSARHAVTLCLVATRASCCNTLFGGHGSARHAVTLCI 265


>SB_50600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -1

Query: 358 SRYSEGI*TPAAYSIXVAGHSKPTHKLTLYIIQSYIVCYNNTGTHGARGYSSLLSILSAP 179
           SR S      A Y   +     P H   +Y ++S+I C NN     +R Y+S +   S P
Sbjct: 28  SRQSLATQPGADYRHPIGASKTPKHVAQVYQLKSFIGC-NNRQQRSSRIYTSSIEKDSCP 86

Query: 178 *R 173
            R
Sbjct: 87  SR 88


>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1027

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/49 (22%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -2

Query: 363  EDPDIVKESELLLRIPSLWLVTPNLLTSLLY-ILYNHTLYVIITLGRTG 220
            + P+  + + LLLR+P+  ++T  +L  + +  ++N++  +++  G  G
Sbjct: 974  QPPETTRFASLLLRLPAARMLTHEVLEEVFFPPVFNNSKILLLIAGAVG 1022


>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
          Length = 882

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = +3

Query: 159 HLLKSLQGALRIDRSEL*PRAPCVPVLL*HTMYDCIIYK-------VSL*VGLE*PATXM 317
           H   SL G+  ++ S++  RAP  PVL+  T YD +  +        +L   ++     M
Sbjct: 280 HPRASLLGSRMMEISKIPARAPDSPVLIVGTHYDMLTAEERRSDLLPTLQAMIKERYVAM 339

Query: 318 EYAAGVQIP 344
           EY  GVQ P
Sbjct: 340 EYGGGVQSP 348


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 61   SGVHDIRNWVKKKEEKAVLDF-NEYSYILQ 147
            SGV+D+  W+ K + K +L + N ++ + Q
Sbjct: 5198 SGVNDLWKWIPKNDSKLILHYLNSFTKVEQ 5227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,081,218
Number of Sequences: 59808
Number of extensions: 236207
Number of successful extensions: 666
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)