Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00560X
         (391 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071021-1|AAL48643.1|  453|Drosophila melanogaster RE10370p pro...    28   3.8  
AE014296-2618|AAF49549.2|  453|Drosophila melanogaster CG5895-PA...    28   3.8  
Y00043-1|CAA68259.1|  383|Drosophila melanogaster protein ( Dros...    27   6.6  
M17718-1|AAA28854.1|  383|Drosophila melanogaster protein ( D.me...    27   6.6  
AF184224-1|AAD55735.1|  383|Drosophila melanogaster Rh3 protein.       27   6.6  
AE014297-2763|AAG22157.1|  383|Drosophila melanogaster CG10888-P...    27   6.6  

>AY071021-1|AAL48643.1|  453|Drosophila melanogaster RE10370p
           protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 67  VHDIRNWVKKKEEKAVLDFNEYSY-ILQHPGTIS*NLFRV 183
           + D+R +VK+  E  VLDF+ +     +HP   S +LFR+
Sbjct: 238 LRDVRQFVKRSGEVVVLDFSSFPIGFYKHPEIYS-SLFRL 276


>AE014296-2618|AAF49549.2|  453|Drosophila melanogaster CG5895-PA
           protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 67  VHDIRNWVKKKEEKAVLDFNEYSY-ILQHPGTIS*NLFRV 183
           + D+R +VK+  E  VLDF+ +     +HP   S +LFR+
Sbjct: 238 LRDVRQFVKRSGEVVVLDFSSFPIGFYKHPEIYS-SLFRL 276


>Y00043-1|CAA68259.1|  383|Drosophila melanogaster protein (
           Drosophila R7 photoreceptorcell opsin gene. ).
          Length = 383

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 336 ELLLRIPSLWLVTPNLLTSLLYILYNHTLYVIITL-GRTGHGVTV 205
           E L  IP  WL  P    S+ Y+L   TLY+  TL    G+G+ +
Sbjct: 38  EELRHIPEHWLTYPEPPESMNYLL--GTLYIFFTLMSMLGNGLVI 80


>M17718-1|AAA28854.1|  383|Drosophila melanogaster protein (
           D.melanogaster opsin(Rh3) gene, complete cds. ).
          Length = 383

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 336 ELLLRIPSLWLVTPNLLTSLLYILYNHTLYVIITL-GRTGHGVTV 205
           E L  IP  WL  P    S+ Y+L   TLY+  TL    G+G+ +
Sbjct: 38  EELRHIPEHWLTYPEPPESMNYLL--GTLYIFFTLMSMLGNGLVI 80


>AF184224-1|AAD55735.1|  383|Drosophila melanogaster Rh3 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 336 ELLLRIPSLWLVTPNLLTSLLYILYNHTLYVIITL-GRTGHGVTV 205
           E L  IP  WL  P    S+ Y+L   TLY+  TL    G+G+ +
Sbjct: 38  EELRHIPEHWLTYPEPPESMNYLL--GTLYIFFTLMSMLGNGLVI 80


>AE014297-2763|AAG22157.1|  383|Drosophila melanogaster CG10888-PA
           protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 336 ELLLRIPSLWLVTPNLLTSLLYILYNHTLYVIITL-GRTGHGVTV 205
           E L  IP  WL  P    S+ Y+L   TLY+  TL    G+G+ +
Sbjct: 38  EELRHIPEHWLTYPEPPESMNYLL--GTLYIFFTLMSMLGNGLVI 80


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,574,807
Number of Sequences: 53049
Number of extensions: 339693
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1086986940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)