Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00560X
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z83234-6|CAB05770.2|  414|Caenorhabditis elegans Hypothetical pr...    26   8.2  
Z79603-1|CAB01897.1|  149|Caenorhabditis elegans Hypothetical pr...    26   8.2  

>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = -2

Query: 348 VKESELLLRIPSLWLVTPNLLTSLLYILYNHTLYVIITLGRT 223
           VK+ ++L+++  ++++  +    LLY   N+T  V +TL R+
Sbjct: 148 VKDGDILVKVNDIYVLDRDSARKLLYASVNNTKTVRLTLERS 189


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 295 KPTHKLTLYIIQSYIVCYNNTGTHGARGYSSLL--SILSAP*RDFKR 161
           KP  + T Y     +V Y  T T   RG   LL  +I+S+  +DF++
Sbjct: 233 KPFVRTTFYANFKNVVYYKGTATTLGRGLQPLLHDAIISSEYKDFRK 279


>Z83234-6|CAB05770.2|  414|Caenorhabditis elegans Hypothetical
           protein K09E4.5 protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 291 LLTSLLYILYNHTLYVII 238
           L+T+ LYI++N TL+++I
Sbjct: 206 LITTYLYIVFNMTLFILI 223


>Z79603-1|CAB01897.1|  149|Caenorhabditis elegans Hypothetical
           protein M163.1 protein.
          Length = 149

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 292 VWSDQPQXWNTQQEFRF 342
           VW D    WN QQ+F+F
Sbjct: 32  VWRDNYYRWNHQQQFQF 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,947,213
Number of Sequences: 27780
Number of extensions: 177267
Number of successful extensions: 412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)