Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00560X
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    30   0.011
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   0.71 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   1.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   1.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   3.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.0  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 0.011
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 339 SELLLRIPSLWLVTPNLLTSLLYILYNHTLYVIIT-LGRTGHGVTV 205
           +E L+ IP  WLV P    SL Y+L    LY++ T L   G+G+ +
Sbjct: 27  AEELIHIPEHWLVYPEPNPSLHYLL--ALLYILFTFLALLGNGLVI 70


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 0.71
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 91  KKKEEKAVLDFNEYSYILQHPGTIS 165
           K    K   DF     +L HPG IS
Sbjct: 330 KNNPPKGAADFTAQVIVLNHPGQIS 354


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 91  KKKEEKAVLDFNEYSYILQHPGTIS 165
           K +  +   DF     +L HPG IS
Sbjct: 330 KNQPPRGAADFTAQVIVLNHPGQIS 354


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 91  KKKEEKAVLDFNEYSYILQHPGTIS 165
           K +  +   DF     +L HPG IS
Sbjct: 41  KNQPPRGAADFTAQVIVLNHPGQIS 65


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 113 SWISTSIVIFYNIQGPSLKISSGCTEDRQE 202
           +WI T+  I + +Q     + SGC   + E
Sbjct: 32  NWIITNSFIIFTMQTGFGMLESGCVSLKNE 61


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 214 GYSSLLSILSAP*RDF 167
           GY  +L +L A  RDF
Sbjct: 82  GYDKILQVLGATPRDF 97


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 232 GTHGARGYSSLLSILSAP*RDF 167
           G  G  GY  +LS+L    RDF
Sbjct: 75  GFVGQYGYDRVLSVLGRHVRDF 96


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 214 GYSSLLSILSAP*RDF 167
           GY  +L +L A  RDF
Sbjct: 82  GYDKILQVLGATPRDF 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,240
Number of Sequences: 438
Number of extensions: 2526
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)