Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00560X
         (391 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    27   5.9  
At3g57500.1 68416.m06401 hypothetical protein                          27   5.9  
At5g44840.1 68418.m05495 glycoside hydrolase family 28 protein /...    26   7.8  
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide...    26   7.8  
At1g27140.1 68414.m03307 glutathione S-transferase, putative sim...    26   7.8  
At1g18010.1 68414.m02228 expressed protein contains 11 transmemb...    26   7.8  
At1g18000.1 68414.m02227 expressed protein contains 11 transmemb...    26   7.8  

>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 354 DIVKESELLLRIPSLWLVTPNL 289
           D+VK S L  R  SLWL+ P+L
Sbjct: 43  DVVKTSVLSTRWRSLWLLVPSL 64


>At3g57500.1 68416.m06401 hypothetical protein 
          Length = 139

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 55  SHSGVHDIRNWVKKK 99
           SH G HDI  WV++K
Sbjct: 84  SHGGDHDIEGWVERK 98


>At5g44840.1 68418.m05495 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Persea americana] GI:166951; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 381

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 291 LLTSLLYILYNHTLYVIITLGRTGHGVT 208
           LLT L  IL N  +Y ++  G  G+G+T
Sbjct: 10  LLTLLHSILVNGQIYDVLEFGADGNGIT 37


>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
            identical to phytochrome A supressor spa1 (GI:4809171)
            [Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
            PF00400) (1 weak)
          Length = 1029

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -1

Query: 349  SEGI*TPAAYSIXVAGHSKPTHKLTLYIIQSYIVCYNNTGTHGARGYSSLLSILSAP*RD 170
            S G+ +P A S+   GH+   + + L ++  YI C    G+     YS   S L  P   
Sbjct: 927  SSGL-SPGACSLTYKGHTNQKNFVGLSVLDGYIAC----GSETNEVYSYYKS-LPMPMTS 980

Query: 169  FKRWSLDVVKYN 134
            +K  S+D +  N
Sbjct: 981  YKFGSVDPISGN 992


>At1g27140.1 68414.m03307 glutathione S-transferase, putative
           similar to glutathione S-transferase GB: AAF22517
           GI:6652870 from [Papaver somniferum] GB:AY050343.
          Length = 243

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 390 SVKADKLPEEDPDIVKESELLLRIPSLWLVTPNLL 286
           S+K + L E D D+ ++S+LLL+   +   TP L+
Sbjct: 29  SIKYEYLEEPDDDLGEKSQLLLKSNPIHKKTPVLI 63


>At1g18010.1 68414.m02228 expressed protein contains 11
           transmembrane domains;
          Length = 459

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 FYNIQGPSLKISSGCT 187
           FYN+ GP L +++GC+
Sbjct: 88  FYNVLGPRLTLAAGCS 103


>At1g18000.1 68414.m02227 expressed protein contains 11
           transmembrane domains;
          Length = 459

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 140 FYNIQGPSLKISSGCT 187
           FYN+ GP L +++GC+
Sbjct: 88  FYNVLGPRLTLAAGCS 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,370,784
Number of Sequences: 28952
Number of extensions: 161026
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)