Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00559X
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 181 6e-47
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 104 9e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 92 4e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 74 1e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 50 3e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 2e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 46 3e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 1e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 38 9e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 28 0.70
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 27 2.1
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 2.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 2.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 3.7
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 6.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.5
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 25 8.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 8.6
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 8.6
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 181 bits (440), Expect = 6e-47
Identities = 79/85 (92%), Positives = 82/85 (96%)
Frame = +3
Query: 3 RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV 182
RPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRV
Sbjct: 37 RPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRV 96
Query: 183 APEEHPVLLTEAPLNPKANREKMTR 257
APEEHP LLTEAPLNPK+NREKMT+
Sbjct: 97 APEEHPCLLTEAPLNPKSNREKMTQ 121
Score = 157 bits (381), Expect = 9e-40
Identities = 73/94 (77%), Positives = 85/94 (90%)
Frame = +2
Query: 227 PQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVXIYEGYAL 406
P+ + + QI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTV IYEGYAL
Sbjct: 112 PKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYAL 171
Query: 407 PHAIVRLDLAGRELTEYLMKILTERGYSFTSTAD 508
PHAI+RLDLAGR+LT+YLMKIL ERGY+F++TA+
Sbjct: 172 PHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAE 205
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 104 bits (249), Expect = 9e-24
Identities = 50/108 (46%), Positives = 68/108 (62%)
Frame = +2
Query: 185 PRGTPSXAH*GSPQPQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 364
PRG P + + + MFE + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 365 GVSHTVXIYEGYALPHAIVRLDLAGRELTEYLMKILTERGYSFTSTAD 508
GV+H V +YE L H + RLD+AGR+ T YL+ +L +GY+F TAD
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTAD 205
Score = 86.6 bits (205), Expect = 2e-18
Identities = 34/70 (48%), Positives = 54/70 (77%)
Frame = +3
Query: 42 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 221
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 222 LNPKANREKM 251
+NP ANREKM
Sbjct: 110 MNPVANREKM 119
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 92.3 bits (219), Expect = 4e-20
Identities = 39/85 (45%), Positives = 63/85 (74%)
Frame = +2
Query: 254 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVXIYEGYALPHAIVRLDL 433
+ +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+V IY+G+++P AI + ++
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEI 185
Query: 434 AGRELTEYLMKILTERGYSFTSTAD 508
GR++T+YL L + G+ S+A+
Sbjct: 186 GGRDVTDYLQLQLRKSGHELVSSAE 210
Score = 91.5 bits (217), Expect = 7e-20
Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELR 179
R +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L
Sbjct: 41 RIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLN 100
Query: 180 VAPEEHPVLLTEAPLNPKANREKM 251
PEEHP+LLTE PL N+EK+
Sbjct: 101 TLPEEHPLLLTEPPLANIRNKEKI 124
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 74.1 bits (174), Expect = 1e-14
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +3
Query: 45 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 221
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 222 LNPKANRE 245
LNP NRE
Sbjct: 133 LNPPENRE 140
Score = 74.1 bits (174), Expect = 1e-14
Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Frame = +2
Query: 227 PQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTV 382
P + +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHII 194
Query: 383 XIYEGYALPHAIVRLDLAGRELTEYLMKILTER 481
+ EGY + +I + LAGR++T ++ +L +R
Sbjct: 195 PVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 49.6 bits (113), Expect = 3e-07
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +3
Query: 87 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTRSCS 266
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K T
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK-TLETM 121
Query: 267 KHSTRPPCTSPSK 305
S R P T +K
Sbjct: 122 FESLRCPATYLAK 134
Score = 45.2 bits (102), Expect = 6e-06
Identities = 22/78 (28%), Positives = 39/78 (50%)
Frame = +2
Query: 254 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVXIYEGYALPHAIVRLDL 433
+ MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 119 ETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHF 178
Query: 434 AGRELTEYLMKILTERGY 487
+G + + L + L ++ +
Sbjct: 179 SGNAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 2e-06
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +2
Query: 254 QIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVXIYEGYALPHAIVRL 427
+++FE +N P++ I + S Y + + ++GIVL+ G+ SH + + G + R+
Sbjct: 136 ELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRI 195
Query: 428 DLAGRELTEYLMKILTERGYSF 493
G + + YL+K+ + SF
Sbjct: 196 SWGGSQSSSYLLKLFQIKYPSF 217
Score = 45.6 bits (103), Expect = 4e-06
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 33 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 209
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 210 TEAPLNPKANREKMT 254
TE NP R MT
Sbjct: 121 TEPLANPTYVRSTMT 135
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 46.0 bits (104), Expect = 3e-06
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = +2
Query: 254 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVXIYEGYALPHAIVRLDL 433
Q FE P +A + ++ LYA G G+V+D G + I +G + A +L L
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPL 226
Query: 434 AGRELTEYLMKILTE 478
GR +T++L +L E
Sbjct: 227 GGRYMTQHLQNLLRE 241
Score = 25.8 bits (54), Expect = 3.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 102 PIEHGIVTNWDDMEKIWHHTF 164
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +3
Query: 6 PRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 179
P + GV + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 180 VAPEEHPVLLTEAPLNPKANREKM 251
V P E+ +++TE NP++ R+++
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQI 120
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/89 (23%), Positives = 42/89 (47%)
Frame = +2
Query: 227 PQGQQREDDQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVXIYEGYAL 406
PQ +++ + FE + PA Y+ QAV +A+ ++T +++D G + + +G +
Sbjct: 113 PQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLII 172
Query: 407 PHAIVRLDLAGRELTEYLMKILTERGYSF 493
I + LAG L + ++ F
Sbjct: 173 RKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 37.9 bits (84), Expect = 9e-04
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +2
Query: 344 IVLDSGDGVSHTVXIYEGYALPHAIVRLDLAGRELTEYLMKILTERGYS 490
+V+DSG +H + + + A+ R+D+ G+ LT YL ++++ R Y+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 28.3 bits (60), Expect = 0.70
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 162 FYNELRVAPEEHPVLLTE--APLNPKANREKMTRSCSKHSTRP 284
+Y L E+HP+LLT+ A L P+ + ++ R K P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 216 APLNPKANREKMTRSCSKHSTRPPCTSPSKP 308
+P++P ANR R S PP + KP
Sbjct: 146 SPISPSANRNDSKRQASSFRRSPPSSVHMKP 176
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 2.1
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 165 YNELRVAPEEHPVLLTEAPLNPK-ANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPVVP 338
Y+EL +A +E P L P PK A++ K + K + S KP S+ TRP +P
Sbjct: 23 YSELPIAYQEIP--LQSLPPYPKVASKLKGVVAGGKENN---IASFQKPSSKATRPYIP 76
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 69 VPHLLHKSPSVPYRPSRPDGGA 4
+ L+ K+PS PY SRP A
Sbjct: 306 IDQLISKAPSYPYSSSRPSASA 327
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 98 FEGQDTSFALCLISYIRVLLSHTDHHA 18
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 6.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 356 SGDGVSHTVXIYEGYALP 409
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 21 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 107
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 225 NPKANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS 347
NP+ K RS S+HS+ SPS S V P S
Sbjct: 290 NPRNGSIKRWRSFSRHSSATYSNSPSSNFSNMKSSEVDPGS 330
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 207 LTEAPLNPKANREKMTRSCSKHSTRPPCTSPSKPCSRCTRPVVP 338
L P PK E+ S S+ + +P +PS P PVVP
Sbjct: 482 LNPPPAMPKVFPERDISSASQKAAQPSVITPSVP-QPPAAPVVP 524
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 231 KANREKMTRSCSKHSTRPPCTSPSKPCS 314
K+N R S+H R PC SP S
Sbjct: 502 KSNTLSPRRKGSRHGPREPCLSPDASSS 529
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 171 ELRVAPEEHPVLLTEAPLNPKANREKMTRSCSKHS 275
E R HPV T AP N + R + R +HS
Sbjct: 92 EARANNAAHPVDATGAPSNRRNARARRGREFDRHS 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,185
Number of Sequences: 5004
Number of extensions: 40428
Number of successful extensions: 129
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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