Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00558
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 145 4e-36
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 92 8e-20
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 85 1e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 71 2e-13
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 30 0.26
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 4.3
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 26 4.3
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 5.6
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho... 26 5.6
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.6
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 7.5
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 9.9
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 9.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 145 bits (352), Expect = 4e-36
Identities = 75/140 (53%), Positives = 93/140 (66%), Gaps = 2/140 (1%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
LVS M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFFM GFAPL + GS ++A++VP
Sbjct: 228 LVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVP 287
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLT--SLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGS 608
ELTQQMFDA NMM A DPRHGRYLT +L V+ + + ++ W
Sbjct: 288 ELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEW--I 345
Query: 609 PTT*RPPCATIPPRGLKMAA 668
P ++PP+ LKM+A
Sbjct: 346 PDNVLKAVCSVPPKDLKMSA 365
Score = 140 bits (340), Expect = 1e-34
Identities = 65/85 (76%), Positives = 74/85 (87%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSGMGTLL+SKIREEYPDR+M T SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CI
Sbjct: 143 TGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCI 202
Query: 181 DNEALYDICFRTLKLSTPTYGDLNH 255
DNEAL I TLK+ +P+Y DLNH
Sbjct: 203 DNEALSSIFANTLKIKSPSYDDLNH 227
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 91.9 bits (218), Expect = 8e-20
Identities = 41/84 (48%), Positives = 58/84 (69%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSG+G LL+ ++ EY + SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +
Sbjct: 149 TGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMV 208
Query: 181 DNEALYDICFRTLKLSTPTYGDLN 252
DNEA YDIC R L + PTY +LN
Sbjct: 209 DNEACYDICRRNLDIERPTYENLN 232
Score = 82.6 bits (195), Expect = 5e-17
Identities = 34/86 (39%), Positives = 53/86 (61%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L++ +S +T LRF G LN DL + N+VP+PR+HF + ++P+ S + + +V
Sbjct: 234 LIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQ 293
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTS 512
E+T Q F+ N M CDPR GRY+ +
Sbjct: 294 EITNQCFEPYNQMVKCDPRTGRYMAT 319
Score = 31.5 bits (68), Expect = 0.11
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 518 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 634
++RG + ++V + +I+++ + FV+W P K +C
Sbjct: 322 LYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGIC 360
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 84.6 bits (200), Expect = 1e-17
Identities = 38/84 (45%), Positives = 55/84 (65%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSG G LL+ ++ EY + SV P+P+VS +VVEPYN+ L+ H ++ D T+ +
Sbjct: 145 TGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMV 204
Query: 181 DNEALYDICFRTLKLSTPTYGDLN 252
DNE+ YDIC R L + P+Y +LN
Sbjct: 205 DNESCYDICRRNLDIERPSYENLN 228
Score = 83.4 bits (197), Expect = 3e-17
Identities = 35/86 (40%), Positives = 53/86 (61%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L++ +S +T LRF G LN DL + N+VP+PR+HF + +AP+ S + + +V
Sbjct: 230 LIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQ 289
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTS 512
E+T Q F+ N M CDPR GRY+ +
Sbjct: 290 EITNQCFEPYNQMVKCDPRAGRYMAT 315
Score = 33.5 bits (73), Expect = 0.028
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 518 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCD 637
++RG + ++V + I+ K + FV+W P K +CD
Sbjct: 318 LYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICD 357
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 70.9 bits (166), Expect = 2e-13
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYC 177
TGSG+G+ L+ ++ + YP +I+ T SV P S VSD VV+PYN+ L++ +L N D
Sbjct: 145 TGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVV 204
Query: 178 IDNEALYDICFRTLKLSTPTYGDLN 252
+DN AL I L PT+ N
Sbjct: 205 LDNAALAHIAADRLHTQNPTFHQQN 229
Score = 60.1 bits (139), Expect = 3e-10
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRAL--- 425
LVS MS TT LR+PG +N DL + +++P PR HF + + P T++ + +A+
Sbjct: 231 LVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKT 290
Query: 426 TVPELTQQMFDAKNMMAACDP 488
TV ++ +++ KN M + +P
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNP 311
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 30.3 bits (65), Expect = 0.26
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 158 TQTKPTASTTRLYTTSASALSNCPHPPTVTLTISFP 265
T T +T + TTS S ++CP PPT L ++ P
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCP-PPTTILIVTVP 200
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 4.3
Identities = 23/79 (29%), Positives = 42/79 (53%)
Frame = +2
Query: 23 SSSQRSVKSTPTES*THNQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTT 202
SSS S S+ + S + + S P + SS+H+ S +S + ++P++S++ + T
Sbjct: 186 SSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSS-SSSSSRPSSSSSFITTM 244
Query: 203 SASALSNCPHPPTVTLTIS 259
S+S + TVT+T S
Sbjct: 245 SSSTFIS-----TVTVTPS 258
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 566 NIQNKNSSYFVEWIPNNVKTAV--CDNSSSWSQDGR 667
+ + +S+ + WIP N KT++ N+ S S++G+
Sbjct: 6 SFSSTSSASSINWIPKNTKTSIESVSNTISLSENGQ 41
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 519 SSAVACP*RRSTSKCLTSRTRTPHTSWNGSPTT*R 623
SS+ A S L S TP+ S+NG+PT+ R
Sbjct: 461 SSSSASRFMSKVSSNLNSGNPTPYNSYNGTPTSSR 495
>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
5',5'''-p1,p6-hexaphosphate hydrolase Aps1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 557 ARRPPSWTCDRGRWQRREVAAVARVTGGHHVLG-VEHLLCELG 432
A++ PSW +G W+ E A + G G V H+ LG
Sbjct: 63 AKKHPSWVVPKGGWEADESVQQAALREGWEEGGLVGHITRSLG 105
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 170 PTASTTRLYTTSASALSNCPHPPTVTLTISFPHNV 274
P STT + + ++ P P TVT S P N+
Sbjct: 1043 PVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNI 1077
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 92 PKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSASALSNCPH 232
PK T H +S T +K+ S+TRL + S S PH
Sbjct: 664 PKTNTEGLMHAQSVSPITQAMKSANVLEGSSTRLNSYEPSVSSAYPH 710
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 9.9
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +2
Query: 17 APSSSQRSVKSTPTES*THNQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLY 196
+PS S T S T N + P T SS+H LS + +P S T +
Sbjct: 127 SPSHSYEPTTFPSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRP-PSPTSIT 185
Query: 197 TTSAS 211
TTS S
Sbjct: 186 TTSTS 190
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 570 SRTRTPHTSWNGSPTT*RPPCATIPPR 650
+R R PHT GSPT R IPP+
Sbjct: 643 NRNRKPHTEVVGSPTVVRTK-EIIPPK 668
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 552 TSKCLTSRTRTPHTSWNGSPTT*RPPCATIPP 647
++K +SRT H+ S T+ PP A PP
Sbjct: 105 STKATSSRTSYDHSEGITSTTSASPPSAPAPP 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,241
Number of Sequences: 5004
Number of extensions: 64843
Number of successful extensions: 231
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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