Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00558
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 170 8e-43
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 168 3e-42
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 168 3e-42
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 168 3e-42
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 166 1e-41
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 163 7e-41
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 163 9e-41
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 162 2e-40
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 161 3e-40
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 97 7e-21
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 94 7e-20
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 94 7e-20
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 94 7e-20
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 94 7e-20
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 94 7e-20
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 94 7e-20
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 67 1e-11
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 66 2e-11
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 32 0.30
At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family pr... 32 0.30
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 32 0.40
At3g22710.1 68416.m02865 F-box family protein contains F-box dom... 28 6.5
At1g60460.1 68414.m06807 hypothetical protein 28 6.5
At4g38110.1 68417.m05382 expressed protein 27 8.5
At3g06950.1 68416.m00825 tRNA pseudouridine synthase family prot... 27 8.5
At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family... 27 8.5
At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similari... 27 8.5
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ... 27 8.5
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 170 bits (413), Expect = 8e-43
Identities = 83/138 (60%), Positives = 97/138 (70%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGS+QYRALTVP
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVP 287
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTSLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGSPT 614
ELTQQM+DAKNMM A DPRHGRYLT+ + + + + + P
Sbjct: 288 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPN 347
Query: 615 T*RPPCATIPPRGLKMAA 668
+ IPP GLKMA+
Sbjct: 348 NVKSTVCDIPPTGLKMAS 365
Score = 156 bits (378), Expect = 1e-38
Identities = 73/85 (85%), Positives = 78/85 (91%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSGMGTLLISKIREEYPDR+M T SV PSPKVSDTVVEPYNATLSVHQLVEN DE +
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVL 202
Query: 181 DNEALYDICFRTLKLSTPTYGDLNH 255
DNEALYDICFRTLKL+TP++GDLNH
Sbjct: 203 DNEALYDICFRTLKLTTPSFGDLNH 227
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 168 bits (409), Expect = 3e-42
Identities = 82/138 (59%), Positives = 97/138 (70%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGS+QYR+LTVP
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVP 287
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTSLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGSPT 614
ELTQQM+D+KNMM A DPRHGRYLT+ + + L + + P
Sbjct: 288 ELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPN 347
Query: 615 T*RPPCATIPPRGLKMAA 668
+ IPP GLKMA+
Sbjct: 348 NVKSTVCDIPPTGLKMAS 365
Score = 156 bits (378), Expect = 1e-38
Identities = 73/85 (85%), Positives = 78/85 (91%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSGMGTLLISKIREEYPDR+M T SV PSPKVSDTVVEPYNATLSVHQLVEN DE +
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVL 202
Query: 181 DNEALYDICFRTLKLSTPTYGDLNH 255
DNEALYDICFRTLKL+TP++GDLNH
Sbjct: 203 DNEALYDICFRTLKLTTPSFGDLNH 227
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 168 bits (409), Expect = 3e-42
Identities = 82/138 (59%), Positives = 97/138 (70%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGS+QYR+LTVP
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVP 287
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTSLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGSPT 614
ELTQQM+D+KNMM A DPRHGRYLT+ + + L + + P
Sbjct: 288 ELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPN 347
Query: 615 T*RPPCATIPPRGLKMAA 668
+ IPP GLKMA+
Sbjct: 348 NVKSTVCDIPPTGLKMAS 365
Score = 156 bits (378), Expect = 1e-38
Identities = 73/85 (85%), Positives = 78/85 (91%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSGMGTLLISKIREEYPDR+M T SV PSPKVSDTVVEPYNATLSVHQLVEN DE +
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVL 202
Query: 181 DNEALYDICFRTLKLSTPTYGDLNH 255
DNEALYDICFRTLKL+TP++GDLNH
Sbjct: 203 DNEALYDICFRTLKLTTPSFGDLNH 227
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 168 bits (409), Expect = 3e-42
Identities = 83/138 (60%), Positives = 96/138 (69%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGS+QYR LTVP
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVP 287
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTSLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGSPT 614
ELTQQM+DAKNMM A DPRHGRYLT+ + + L + + P
Sbjct: 288 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPN 347
Query: 615 T*RPPCATIPPRGLKMAA 668
+ IPP GLKMA+
Sbjct: 348 NVKSTVCDIPPTGLKMAS 365
Score = 157 bits (382), Expect = 5e-39
Identities = 74/85 (87%), Positives = 78/85 (91%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSGMGTLLISKIREEYPDR+M T SV PSPKVSDTVVEPYNATLSVHQLVEN DE +
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVL 202
Query: 181 DNEALYDICFRTLKLSTPTYGDLNH 255
DNEALYDICFRTLKLSTP++GDLNH
Sbjct: 203 DNEALYDICFRTLKLSTPSFGDLNH 227
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 166 bits (403), Expect = 1e-41
Identities = 81/138 (58%), Positives = 96/138 (69%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGS+QYRALTVP
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVP 287
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTSLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGSPT 614
ELTQQM+D+KNMM A DPRHGRYLT+ + + + + + P
Sbjct: 288 ELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPN 347
Query: 615 T*RPPCATIPPRGLKMAA 668
+ I PRGL MA+
Sbjct: 348 NVKSSVCDIAPRGLSMAS 365
Score = 156 bits (378), Expect = 1e-38
Identities = 73/85 (85%), Positives = 78/85 (91%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSGMGTLLISKIREEYPDR+M T SV PSPKVSDTVVEPYNATLSVHQLVEN DE +
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVL 202
Query: 181 DNEALYDICFRTLKLSTPTYGDLNH 255
DNEALYDICFRTLKL+TP++GDLNH
Sbjct: 203 DNEALYDICFRTLKLTTPSFGDLNH 227
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 163 bits (397), Expect = 7e-41
Identities = 80/138 (57%), Positives = 96/138 (69%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGS+QY AL+VP
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVP 287
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTSLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGSPT 614
ELTQQM+DAKNMM A DPRHGRYLT+ + + + + + P
Sbjct: 288 ELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPN 347
Query: 615 T*RPPCATIPPRGLKMAA 668
+ I P+GLKMA+
Sbjct: 348 NVKSSVCDIAPKGLKMAS 365
Score = 156 bits (378), Expect = 1e-38
Identities = 73/85 (85%), Positives = 77/85 (90%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSGMGTLLISKIREEYPDR+M T SV PSPKVSDTVVEPYNATLSVHQLVEN DE +
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVL 202
Query: 181 DNEALYDICFRTLKLSTPTYGDLNH 255
DNEALYDICFRTLKL+ PT+GDLNH
Sbjct: 203 DNEALYDICFRTLKLANPTFGDLNH 227
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 163 bits (396), Expect = 9e-41
Identities = 81/138 (58%), Positives = 96/138 (69%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S TMSGVT LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGS+QY +LTVP
Sbjct: 229 LISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVP 288
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTSLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGSPT 614
ELTQQM+D+KNMM A DPRHGRYLT+ + + L + + P
Sbjct: 289 ELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPN 348
Query: 615 T*RPPCATIPPRGLKMAA 668
+ IPP+GLKMAA
Sbjct: 349 NVKSSVCDIPPKGLKMAA 366
Score = 157 bits (381), Expect = 6e-39
Identities = 74/85 (87%), Positives = 78/85 (91%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSGMGTLLISKIREEYPDR+M T SV PSPKVSDTVVEPYNATLSVHQLVEN DE +
Sbjct: 144 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVL 203
Query: 181 DNEALYDICFRTLKLSTPTYGDLNH 255
DNEALYDICFRTLKLSTP++GDLNH
Sbjct: 204 DNEALYDICFRTLKLSTPSFGDLNH 228
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 162 bits (394), Expect = 2e-40
Identities = 80/138 (57%), Positives = 95/138 (68%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGS+QY AL+VP
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVP 287
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTSLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGSPT 614
ELTQQM+DAKNMM A DPRHGRYLT+ + + + + + P
Sbjct: 288 ELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPN 347
Query: 615 T*RPPCATIPPRGLKMAA 668
+ I P GLKMA+
Sbjct: 348 NVKSSVCDIAPTGLKMAS 365
Score = 156 bits (378), Expect = 1e-38
Identities = 73/85 (85%), Positives = 77/85 (90%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSGMGTLLISKIREEYPDR+M T SV PSPKVSDTVVEPYNATLSVHQLVEN DE +
Sbjct: 143 TGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVL 202
Query: 181 DNEALYDICFRTLKLSTPTYGDLNH 255
DNEALYDICFRTLKL+ PT+GDLNH
Sbjct: 203 DNEALYDICFRTLKLANPTFGDLNH 227
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 161 bits (392), Expect = 3e-40
Identities = 80/138 (57%), Positives = 95/138 (68%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S TMSGVT LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGS+QY +LTVP
Sbjct: 229 LISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVP 288
Query: 435 ELTQQMFDAKNMMAACDPRHGRYLTSLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGSPT 614
ELTQQM+DAKNMM A DPRHGRYLT+ + + L + + P
Sbjct: 289 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPN 348
Query: 615 T*RPPCATIPPRGLKMAA 668
+ IPP G+KMA+
Sbjct: 349 NVKSSVCDIPPTGIKMAS 366
Score = 157 bits (381), Expect = 6e-39
Identities = 74/85 (87%), Positives = 78/85 (91%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSGMGTLLISKIREEYPDR+M T SV PSPKVSDTVVEPYNATLSVHQLVEN DE +
Sbjct: 144 TGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVL 203
Query: 181 DNEALYDICFRTLKLSTPTYGDLNH 255
DNEALYDICFRTLKLSTP++GDLNH
Sbjct: 204 DNEALYDICFRTLKLSTPSFGDLNH 228
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 97.5 bits (232), Expect = 7e-21
Identities = 38/84 (45%), Positives = 57/84 (67%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S T+S +TT LRF G +N D+ + N+VP+PR+HF + +AP+ S + +VP
Sbjct: 230 LISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVP 289
Query: 435 ELTQQMFDAKNMMAACDPRHGRYL 506
E+T +F+ NMMA CDPRHG+Y+
Sbjct: 290 EITTSVFEPSNMMAKCDPRHGKYM 313
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/84 (47%), Positives = 59/84 (70%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSG+G+LL+ ++ ++ + ++ PSP+VS VVEPYN+ LS H L+E+TD +
Sbjct: 145 TGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLL 204
Query: 181 DNEALYDICFRTLKLSTPTYGDLN 252
DNEA+YDIC R+L + PTY +LN
Sbjct: 205 DNEAIYDICRRSLDIERPTYSNLN 228
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 518 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 631
++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 318 MYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGI 355
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 94.3 bits (224), Expect = 7e-20
Identities = 37/84 (44%), Positives = 57/84 (67%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S +S +TT LRF G +N D+ + N+VP+PR+HF + +AP+ S + L+VP
Sbjct: 230 LISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVP 289
Query: 435 ELTQQMFDAKNMMAACDPRHGRYL 506
E+T +F+ +MMA CDPRHG+Y+
Sbjct: 290 EITNAVFEPASMMAKCDPRHGKYM 313
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/84 (48%), Positives = 59/84 (70%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSG+G+LL+ ++ +Y + ++ PSP+VS VVEPYN+ LS H L+E+TD +
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 204
Query: 181 DNEALYDICFRTLKLSTPTYGDLN 252
DNEA+YDIC R+L + PTY +LN
Sbjct: 205 DNEAIYDICRRSLDIERPTYTNLN 228
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 518 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 631
++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGI 355
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 94.3 bits (224), Expect = 7e-20
Identities = 37/84 (44%), Positives = 57/84 (67%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
L+S +S +TT LRF G +N D+ + N+VP+PR+HF + +AP+ S + L+VP
Sbjct: 230 LISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVP 289
Query: 435 ELTQQMFDAKNMMAACDPRHGRYL 506
E+T +F+ +MMA CDPRHG+Y+
Sbjct: 290 EITNAVFEPASMMAKCDPRHGKYM 313
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/84 (48%), Positives = 59/84 (70%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSG+G+LL+ ++ +Y + ++ PSP+VS VVEPYN+ LS H L+E+TD +
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLL 204
Query: 181 DNEALYDICFRTLKLSTPTYGDLN 252
DNEA+YDIC R+L + PTY +LN
Sbjct: 205 DNEAIYDICRRSLDIERPTYTNLN 228
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 518 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 631
++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGI 355
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 94.3 bits (224), Expect = 7e-20
Identities = 42/84 (50%), Positives = 61/84 (72%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSG+G+LL+ ++ +Y + +V PSP+VS +VVEPYN+ LS H L+E+TD + +
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILL 204
Query: 181 DNEALYDICFRTLKLSTPTYGDLN 252
DNEA+YDIC R+L + PTY +LN
Sbjct: 205 DNEAIYDICRRSLNIERPTYTNLN 228
Score = 88.2 bits (209), Expect = 4e-18
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V
Sbjct: 230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVA 289
Query: 435 ELTQQMFDAKNMMAACDPRHGRYL 506
E+T F+ +MMA CDPRHG+Y+
Sbjct: 290 EITNSAFEPASMMAKCDPRHGKYM 313
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 518 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 631
++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGI 355
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 94.3 bits (224), Expect = 7e-20
Identities = 42/84 (50%), Positives = 61/84 (72%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSG+G+LL+ ++ +Y + +V PSP+VS +VVEPYN+ LS H L+E+TD + +
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILL 204
Query: 181 DNEALYDICFRTLKLSTPTYGDLN 252
DNEA+YDIC R+L + PTY +LN
Sbjct: 205 DNEAIYDICRRSLNIERPTYTNLN 228
Score = 88.2 bits (209), Expect = 4e-18
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V
Sbjct: 230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVA 289
Query: 435 ELTQQMFDAKNMMAACDPRHGRYL 506
E+T F+ +MMA CDPRHG+Y+
Sbjct: 290 EITNSAFEPASMMAKCDPRHGKYM 313
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 518 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 631
++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGI 355
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 94.3 bits (224), Expect = 7e-20
Identities = 42/84 (50%), Positives = 61/84 (72%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSG+G+LL+ ++ +Y + +V PSP+VS +VVEPYN+ LS H L+E+TD + +
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILL 204
Query: 181 DNEALYDICFRTLKLSTPTYGDLN 252
DNEA+YDIC R+L + PTY +LN
Sbjct: 205 DNEAIYDICRRSLSIERPTYTNLN 228
Score = 88.2 bits (209), Expect = 4e-18
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V
Sbjct: 230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVA 289
Query: 435 ELTQQMFDAKNMMAACDPRHGRYL 506
E+T F+ +MMA CDPRHG+Y+
Sbjct: 290 EITNSAFEPASMMAKCDPRHGKYM 313
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 518 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 631
++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGI 355
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 94.3 bits (224), Expect = 7e-20
Identities = 42/84 (50%), Positives = 61/84 (72%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCI 180
TGSG+G+LL+ ++ +Y + +V PSP+VS +VVEPYN+ LS H L+E+TD + +
Sbjct: 145 TGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILL 204
Query: 181 DNEALYDICFRTLKLSTPTYGDLN 252
DNEA+YDIC R+L + PTY +LN
Sbjct: 205 DNEAIYDICRRSLSIERPTYTNLN 228
Score = 88.2 bits (209), Expect = 4e-18
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVP 434
LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V
Sbjct: 230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVA 289
Query: 435 ELTQQMFDAKNMMAACDPRHGRYL 506
E+T F+ +MMA CDPRHG+Y+
Sbjct: 290 EITNSAFEPASMMAKCDPRHGKYM 313
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 518 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 631
++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 318 MYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGI 355
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYC 177
TGSGMG+ L+ + + Y +++ T SV P+ + SD VV+PYN+ L++ +L N D
Sbjct: 145 TGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVV 204
Query: 178 IDNEALYDICFRTLKLSTPTYGDLN 252
+DN AL I L L+ PT+ N
Sbjct: 205 LDNTALNRIAVERLHLTNPTFAQTN 229
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT-SRGSRQYRALTV 431
LVS MS TT LR+PG +N DL L +++P PR HF M G+ PLT R + R TV
Sbjct: 231 LVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTV 290
Query: 432 PELTQQMFDAKNMMAACDPRH 494
++ +++ KN+M + R+
Sbjct: 291 LDVMRRLLQTKNIMVSSYARN 311
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 TGSGMGTLLISKIREEYPDRIMNT*SVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYC 177
TGSGMG+ L+ + + Y +++ T SV P+ + SD VV+PYN+ L++ +L N D
Sbjct: 145 TGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVV 204
Query: 178 IDNEALYDICFRTLKLSTPTYGDLN 252
+DN AL I L L+ PT+ N
Sbjct: 205 LDNTALGRIAVERLHLTNPTFAQTN 229
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT-SRGSRQYRALTV 431
LVS MS TT LR+PG +N DL L +++P PR HF M G+ PLT R + R TV
Sbjct: 231 LVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTV 290
Query: 432 PELTQQMFDAKNMMAACDPRH 494
++ +++ KN+M + R+
Sbjct: 291 LDVMRRLLQTKNIMVSSYARN 311
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 518 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDNS 643
I +G + +V E + I+ + F+EW P +++ A+ S
Sbjct: 325 IIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKS 366
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +1
Query: 100 SDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLST 231
S+ ++ P ++++ +LV D TY + + ++ D C R +K+ST
Sbjct: 77 SNLLIPPLSSSMGSSKLVSLEDSTYTLPSPSVSDSCERLMKMST 120
>At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family
protein similar to CoA-thioester hydrolase CHY1
(beta-hydroxyisobutyryl-CoA hydrolase) [Arabidopsis
thaliana] GI:8572760; contains Pfam profile PF00378:
enoyl-CoA hydratase/isomerase family protein
Length = 381
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 500 LPHVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVK 622
LPH+ + F S+KE E++ Q S VEW +K
Sbjct: 241 LPHIESAFSSNKSIKETIEELKKYQQSTESSVVEWANEALK 281
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 302 RSVER*SQKIGRKHGSLPASPLLHARFRSPHIPWKQTVPCLD 427
+ VER QKI RK S LL + R P W ++ P L+
Sbjct: 588 QEVERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKPILE 629
>At3g22710.1 68416.m02865 F-box family protein contains F-box domain
Pfam:PF00646
Length = 326
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 500 LPHVAAIFRGRMSMKEVDEQMLNIQN--KNSSYFVEWIPNNVKT 625
LPH + G M + V E+ L+I + +N+S WI NN+ T
Sbjct: 180 LPHFQDV--GNMDLSVVREEQLSILHWTRNTSKMEIWITNNIDT 221
>At1g60460.1 68414.m06807 hypothetical protein
Length = 356
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 491 PRPLPHVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEW 604
P P+PH+A ++ K+ + N+ +++ F+EW
Sbjct: 161 PSPVPHLALSALKKIDWKKYGLILANVNDQDGHVFLEW 198
>At4g38110.1 68417.m05382 expressed protein
Length = 475
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Frame = +3
Query: 87 LAQSIRHCRRTIQCDSLSSPAS*KHRRNLLHRQRGSIRHLLPHSQTVH 230
+ + + H +++ D ++PA+ K++R+L ++ ++ HLL + H
Sbjct: 347 VVKGVEHTLQSLHSDRETTPANFKYKRSLENQLTSTMLHLLSLVSSCH 394
>At3g06950.1 68416.m00825 tRNA pseudouridine synthase family protein
similar to SP|P07649 tRNA pseudouridine synthase A (EC
4.2.1.70) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF01416: tRNA pseudouridine
synthase
Length = 323
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 296 VPRSVER*SQKIGRKHGSLPASP----LLHARFRSPHIPWKQTVPCLDCTRAHT 445
VP +E +++ K+ SLPASP L+ +++ H+ P R HT
Sbjct: 261 VPMILETKDRRVLAKYTSLPASPHGLCLVSVKYKEDHLKLPLDCPVTSSGRHHT 314
>At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family
protein Common family member:At3g26910 [Arabidopsis
thaliana]
Length = 623
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/79 (30%), Positives = 29/79 (36%)
Frame = +2
Query: 155 KTQTKPTASTTRLYTTSASALSNCPHPPTVTLTISFPHNVWCHHLP*VPRSVER*SQKIG 334
K + PTAS T + T S L P PP + T S + P V RS I
Sbjct: 490 KVSSSPTASPTFVSTPKISELHELPRPPPRSSTKS--SRELGYSAPLVSRSQLLSKPLIT 547
Query: 335 RKHGSLPASPLLHARFRSP 391
LP P + F P
Sbjct: 548 NSASPLPIPPAITRSFSIP 566
>At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similarity
to elicitor inducible beta-1,3-glucanase NtEIG-E76
[Nicotiana tabacum] GI:11071974
Length = 222
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 507 TSLPSSAVACP*RRSTSKCLTSRTRTPHTSWNGSPTT*RPPCAT 638
T+ PS+A C S+S T+ T T T +G+PTT P T
Sbjct: 93 TTPPSTASNCLTGSSSSGTPTTGTPTTGTPTSGTPTTGTPTTGT 136
>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1933
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 255 LVSLTMSGVTTCLRFPGQLNADLRKLAV--NMVPFPRLHFFMPGFAPLTSRGSRQYRALT 428
LV +++ + LR ++ D ++A F + H P + RG RQ++
Sbjct: 50 LVPSSLASIAPILRVANDIDQDNARVAYLCRFHAFEKAHRMDP---TSSGRGVRQFKTYL 106
Query: 429 VPELTQQMFDAKNMMAACDPR 491
+ +L ++ ++M+A DPR
Sbjct: 107 LHKLEEEEEITEHMLAKSDPR 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,614,147
Number of Sequences: 28952
Number of extensions: 376232
Number of successful extensions: 1121
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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