Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00557
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    29   0.85 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.0  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    27   2.6  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +1

Query: 403 SVPDNDHHDSGLNVTWLGHCCSILLHHG-VQYL----RQTVENEP**IQARPENQ 552
           S+P +   +  L  +WL H  ++L +HG ++YL    R  + N    IQA P  Q
Sbjct: 386 SLPLDQEKELSLRKSWLSHFSNLLFNHGQLKYLPVLTRDEISNYLLNIQAHPNYQ 440


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/63 (33%), Positives = 26/63 (41%)
 Frame = +3

Query: 69  MFTNVYNTGLLITLTNYIGAGSHSFDRTTSFDSIDLEELSEPTTTLQPAQQSSESPLLSG 248
           ++ +VY TG  +  T      S S   TTS  S      S  TTT  P+  SS S   S 
Sbjct: 111 LYWSVYLTGNGVLQTT---VSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSS 167

Query: 249 VGS 257
             S
Sbjct: 168 SSS 170


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 185 ELFQVDAIEASGAIEAMGTSSNVIGQSNQQPGIVDIG-EHGQVTKDEATNPQWKAVTAF 12
           EL +  A  A   + + G  S+ +   ++ PG+VD+G E+ +V  DEAT  +  A  AF
Sbjct: 377 ELLERSADTADADVPS-GLYSHALVNLHEHPGLVDLGSENIRVPIDEATALKSFAKAAF 434


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 YLTACPAILGIAPPQWGRIVLLMTIV 277
           Y+T  P +LG+ P   GR+  L+ ++
Sbjct: 666 YVTLLPMMLGLLPADSGRLTSLLKLI 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,760
Number of Sequences: 5004
Number of extensions: 52980
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)