Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00557
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0842 + 25307509-25308049,25308507-25308659,25308770-253089... 30 2.0
07_01_0691 - 5224260-5224277,5224663-5224733,5224774-5224953,522... 29 2.7
07_03_1398 - 26271034-26271131,26271314-26271425,26271750-262717... 29 3.5
07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567... 29 3.5
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280... 29 3.5
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432... 29 4.7
02_01_0681 - 5059082-5059217,5059318-5059783,5059869-5060072,506... 29 4.7
01_05_0361 + 21377080-21377281,21378619-21378705,21379862-213801... 28 8.2
>06_03_0842 +
25307509-25308049,25308507-25308659,25308770-25308973,
25309056-25309521,25309614-25309746
Length = 498
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 203 LTACPAILGIAPPQWGRIVLLMTIVINAAWLLVNIACVVG 322
+T+ ++G A QWGRI L ++VIN +++ ++G
Sbjct: 142 ITSYGWLMGEAYGQWGRIALQASVVINNIGVMIVYMIIIG 181
>07_01_0691 -
5224260-5224277,5224663-5224733,5224774-5224953,
5226391-5227072
Length = 316
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +2
Query: 326 HRRRPGNIKFYVLFAACRLVLVFAGLVYLTMTITTPALMLHGLDIAVASYFITVYNTYAR 505
H R + +F+V +V G+VY M A+++ GL + FI ++
Sbjct: 31 HWRGKQSRQFFVEMQKANSGVVVNGVVYFLMDALYDAMIISGLGAGIHPDFIFSFDLETE 90
Query: 506 QWR 514
+WR
Sbjct: 91 EWR 93
>07_03_1398 -
26271034-26271131,26271314-26271425,26271750-26271793,
26272158-26272485,26272569-26272982
Length = 331
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 394 KDQDEAAGCEEDVELDVTRSPPV*SDHTSDVDKQPCSIYYYRHQKHDPTPLRR 236
++++E +D E D ++ PV S + V QPC H+K D L++
Sbjct: 228 EEEEENIAAADDSEEDGLKNEPVLSKNRRKVMTQPCQYCSSVHEKDDDAVLQQ 280
>07_03_1395 -
26255776-26256043,26256194-26256414,26256550-26256786,
26257476-26257776,26258027-26258106
Length = 368
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 377 RLVLVFAGLVYLTMTITTPALMLHGLDIAVASYFITVYNTYARQWRMSRSKFKPDLKTRT 556
RL+L AGL Y +TT ++ + + I VA + YA++ + +
Sbjct: 282 RLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDEMERSEGTCPEPA 341
Query: 557 GTSHSS 574
G +H S
Sbjct: 342 GIAHGS 347
>06_01_0390 +
2802334-2802339,2802461-2802618,2802755-2802826,
2802967-2803114,2803234-2803503,2803741-2803904,
2804184-2804236,2804302-2804496,2804597-2804694,
2804787-2804891
Length = 422
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 48 FILG-YLTM-FTNVYNTGLLITLT-NYIGAGSHSFDRTTSFDSIDL 176
FI G Y+ + F N N+ L I LT NYI A S S T +FD ID+
Sbjct: 75 FIYGSYIGLHFANENNSFLAIKLTVNYIIAASSSNIYTKTFDGIDV 120
>09_03_0042 +
11842263-11842698,11842799-11842896,11843082-11843217,
11843349-11843509,11843603-11843753,11843855-11843952,
11844142-11844277,11844404-11844532,11844622-11844720,
11844814-11844909,11845002-11845100,11845201-11845296,
11846394-11846628,11846752-11846873,11846993-11847114,
11847275-11847345,11847940-11848027,11848374-11848439,
11848676-11848795
Length = 852
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Frame = +3
Query: 51 ILGYLTMFTNVYNTGLLITLTNYIGAGSH-SFD-----RTTSFDSIDLEELSEPTTTLQP 212
+L L + T + TL + + +H ++D R T+FDS++L+ + PT+ +
Sbjct: 620 VLACLNLETLQPRNSICTTLQSELSGSAHPTYDHQTVMRPTTFDSLELDMVDTPTSDVSN 679
Query: 213 AQQSSE 230
A++ S+
Sbjct: 680 AKEQSQ 685
>02_01_0681 -
5059082-5059217,5059318-5059783,5059869-5060072,
5060163-5060315,5060849-5061269
Length = 459
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 203 LTACPAILGIAPPQWGRIVLLMTIVINAAWLLVNIACVVG 322
+T+ ++G QWGRI L ++VIN +++ +VG
Sbjct: 102 ITSYGWLMGETFGQWGRIALQASVVINNIGMMIVYMIIVG 141
>01_05_0361 +
21377080-21377281,21378619-21378705,21379862-21380134,
21380304-21380378,21380470-21380550,21380837-21381034,
21381145-21381234,21381310-21381467,21381619-21381741,
21381891-21382034,21382175-21382285,21382583-21382624,
21383043-21383261,21385319-21385627
Length = 703
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 269 TIVINAAWLLVNIACVVGLHRRRPGNI 349
+++ +AA ++AC+VGL R+ GN+
Sbjct: 535 SLISDAASRTASLACIVGLSRKEDGNL 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,381,359
Number of Sequences: 37544
Number of extensions: 374034
Number of successful extensions: 997
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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