Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00557
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024759-4|AAK68434.1| 356|Caenorhabditis elegans Hypothetical ... 31 0.60
AC024759-3|AAK68433.1| 355|Caenorhabditis elegans Hypothetical ... 29 4.2
AC024759-2|AAM97964.1| 376|Caenorhabditis elegans Hypothetical ... 29 4.2
AC024759-1|AAK73907.1| 376|Caenorhabditis elegans Hypothetical ... 29 4.2
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 28 5.6
U39999-5|AAA81106.1| 263|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 28 5.6
U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z50873-3|CAA90761.4| 531|Caenorhabditis elegans Hypothetical pr... 27 9.8
U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AC024759-4|AAK68434.1| 356|Caenorhabditis elegans Hypothetical
protein Y37E11AR.4 protein.
Length = 356
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 412 DNDHHDSGLNVTWLGHCCSILLHHGVQYLRQTV 510
D+ H +SGL TWLGH ++ GV+++ V
Sbjct: 76 DDFHSESGLFATWLGHATVLVDLEGVKFVTDPV 108
>AC024759-3|AAK68433.1| 355|Caenorhabditis elegans Hypothetical
protein Y37E11AR.3a protein.
Length = 355
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 412 DNDHHDSGLNVTWLGHCCSILLHHGVQYLRQTV 510
D+ H +S L TWLGH ++ GV+++ V
Sbjct: 74 DDFHSESDLFATWLGHATVLVDLEGVKFVTDPV 106
>AC024759-2|AAM97964.1| 376|Caenorhabditis elegans Hypothetical
protein Y37E11AR.3c protein.
Length = 376
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 412 DNDHHDSGLNVTWLGHCCSILLHHGVQYLRQTV 510
D+ H +S L TWLGH ++ GV+++ V
Sbjct: 95 DDFHSESDLFATWLGHATVLVDLEGVKFVTDPV 127
>AC024759-1|AAK73907.1| 376|Caenorhabditis elegans Hypothetical
protein Y37E11AR.3b protein.
Length = 376
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 412 DNDHHDSGLNVTWLGHCCSILLHHGVQYLRQTV 510
D+ H +S L TWLGH ++ GV+++ V
Sbjct: 95 DDFHSESDLFATWLGHATVLVDLEGVKFVTDPV 127
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical protein
F33C8.1b protein.
Length = 1234
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 305 IACVVGLHRRRPGN-IKFYVLFAACRLV-LVFAGLVYL 412
+ VV + P N + F+V+FAAC +V LV AGL+++
Sbjct: 1124 VQIVVSFAQSPPINWVLFFVIFAACFIVLLVVAGLLWM 1161
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical protein
F33C8.1a protein.
Length = 1271
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 305 IACVVGLHRRRPGN-IKFYVLFAACRLV-LVFAGLVYL 412
+ VV + P N + F+V+FAAC +V LV AGL+++
Sbjct: 1161 VQIVVSFAQSPPINWVLFFVIFAACFIVLLVVAGLLWM 1198
>U39999-5|AAA81106.1| 263|Caenorhabditis elegans Hypothetical
protein F41G3.5 protein.
Length = 263
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 592 RPLCEDR*MRRPCSGFQVGLEFTTAHSPLSGVGIVHRD 479
R C +R R +G Q+G++ A L +G +HRD
Sbjct: 45 RANCPNRKFSRR-TGLQIGIQMINAIQQLHSIGFIHRD 81
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin protein.
Length = 1329
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 305 IACVVGLHRRRPGN-IKFYVLFAACRLV-LVFAGLVYL 412
+ VV + P N + F+V+FAAC +V LV AGL+++
Sbjct: 1161 VQIVVSFAQSPPINWVLFFVIFAACFIVLLVVAGLLWM 1198
>U40799-2|AAA81480.1| 712|Caenorhabditis elegans Hypothetical
protein F42C5.4 protein.
Length = 712
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 253 DRASDDDSNKCCMVACQHRLCGRTTQEAT 339
DR D+D + C+ +C H LC + + T
Sbjct: 39 DRFFDNDKKRPCVSSCNHSLCSQCFDKFT 67
>Z50873-3|CAA90761.4| 531|Caenorhabditis elegans Hypothetical
protein F17E5.2 protein.
Length = 531
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 168 IDLEELSEPTTTLQPAQQSSESPLLSG 248
IDL+ + E T+QP + S PL+ G
Sbjct: 23 IDLKNIGEHARTVQPFKTSKHQPLIQG 49
>U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical
protein F07C3.10 protein.
Length = 562
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 268 HQKHDPTPLRRGDSE 224
H+KHD +PLR DSE
Sbjct: 112 HRKHDDSPLRSSDSE 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,429,500
Number of Sequences: 27780
Number of extensions: 309159
Number of successful extensions: 827
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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