Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00557
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.30 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +3

Query: 96  LLITLTNYIGAGSHS----FDRTTSFDSIDLEELSEPTTTLQ 209
           L +TL  + G G+++      RT S    DL++L EP TT+Q
Sbjct: 254 LELTLRIHRGGGTNTDARHLFRTASSTPEDLQDLEEPLTTIQ 295


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 354 NLMLPGRLLCSPTTQAMLTSNHAAFITIVIRSTIRPH*GGAIPRIAG 214
           NL+L  RL  + + Q  L S+H+   + + RS    H  G  P  AG
Sbjct: 266 NLLLKARLNPNSSLQPSLASHHSHLSSALGRSAC--HSPGVYPSTAG 310


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 419 TITTPALMLHGLDIAVASYFITVYNTYARQW 511
           TITTPA+ +      +  +    Y TY   W
Sbjct: 496 TITTPAICVGVFTFNIIKFVPVKYLTYEYPW 526


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 419 TITTPALMLHGLDIAVASYFITVYNTYARQW 511
           TITTPA+ +      +  +    Y TY   W
Sbjct: 549 TITTPAICVGVFTFNIIKFVPVKYLTYEYPW 579


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 473 YFITVYN-TYARQWRMSRSKFKPD 541
           Y + VY+    R WR++ S F PD
Sbjct: 215 YGLIVYSWEQNRSWRITHSYFMPD 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,176
Number of Sequences: 438
Number of extensions: 3828
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)