Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00557
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00...    32   0.42 
At3g26930.1 68416.m03369 hypothetical protein                          27   9.0  

>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 338

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 406 VPDNDHHDSGLNVTWLGHCCSILLHHGVQYLRQTVEN 516
           V D+ +HDS +N  +LG CC + L   + +L   VE+
Sbjct: 182 VIDDVNHDSLVNHNYLGRCCRVSLKGNIYWLVDDVED 218


>At3g26930.1 68416.m03369 hypothetical protein
          Length = 409

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 11  KMLLLLSTEDWLLHPWLPDHVHQCLQYRAVDYFDQLH 121
           KML  L  +DW+     PD+V++CL      +   LH
Sbjct: 13  KMLPRLKFDDWMF----PDNVNRCLLSHQASFLQSLH 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,554,747
Number of Sequences: 28952
Number of extensions: 289382
Number of successful extensions: 714
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)