Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00556
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 140 2e-34
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 140 2e-34
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.002
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.66
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.7
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 3.5
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 4.7
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 6.2
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 26 6.2
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.2
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 8.2
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 140 bits (339), Expect = 2e-34
Identities = 70/86 (81%), Positives = 76/86 (88%)
Frame = +1
Query: 250 TQRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAII 429
T+RFRKA+ IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116
Query: 430 NSGPREDSTRIGRAGTVRRQAVDVSP 507
GPREDSTRIG AGTVRRQAVDVSP
Sbjct: 117 ACGPREDSTRIGSAGTVRRQAVDVSP 142
Score = 105 bits (253), Expect = 5e-24
Identities = 50/61 (81%), Positives = 58/61 (95%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSN
Sbjct: 143 LRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSN 202
Query: 687 R 689
R
Sbjct: 203 R 203
Score = 39.5 bits (88), Expect = 5e-04
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +2
Query: 71 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 247
A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+AGR+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRF 55
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 140 bits (339), Expect = 2e-34
Identities = 70/86 (81%), Positives = 76/86 (88%)
Frame = +1
Query: 250 TQRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAII 429
T+RFRKA+ IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116
Query: 430 NSGPREDSTRIGRAGTVRRQAVDVSP 507
GPREDSTRIG AGTVRRQAVDVSP
Sbjct: 117 ACGPREDSTRIGSAGTVRRQAVDVSP 142
Score = 105 bits (253), Expect = 5e-24
Identities = 50/61 (81%), Positives = 58/61 (95%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSN
Sbjct: 143 LRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSN 202
Query: 687 R 689
R
Sbjct: 203 R 203
Score = 37.1 bits (82), Expect = 0.003
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +2
Query: 92 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 247
T SL + E IKLF ++ V+V D+SL DYI++ + LPH+AGR+
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRF 55
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +1
Query: 283 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 441
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.66
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 342 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 440
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 107 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 250
+ ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 616 QLRVHLTPTPSKRRTSWSVLLNPTV 690
Q ++H P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 466 RAGTVRRQAVDVSPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQMN*LMQLRVHLTPTP 645
+ TVRR+ VSP + S S + + S+ LKQ++ +N L L P
Sbjct: 85 KRSTVRRRHKKVSPSSGSFVASDYVVLQQIAQSSKTLKQTEPEKPVNEEETLAALLAPAL 144
Query: 646 SKRRTSWSVLL 678
S ++ S L+
Sbjct: 145 SYPKSGKSNLI 155
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 291 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 413
PYK+ + + W + G+TY + + + L R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 364 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPCAES 519
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP S
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKRS 208
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 274 YPIVERLTNSLMMHGRNNGKKL 339
YP++E++T+ L HG N L
Sbjct: 92 YPVIEKITDILTKHGITNANLL 113
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 188 DYISVKEKYAKYLPHSAGRYAHSVSVKPSTQSW 286
D YA YLP S G Y+ S+ T W
Sbjct: 295 DLSVASSSYADYLPKSYGMYSFLDSIGIGTACW 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,116
Number of Sequences: 5004
Number of extensions: 60409
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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