Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00556
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 152 3e-37
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 151 5e-37
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 4.9
05_03_0259 - 11161447-11161706,11161764-11164266 29 4.9
03_06_0610 + 35052455-35053429,35054936-35055511 29 4.9
12_02_0611 + 21118777-21119066,21119501-21119594,21119742-211201... 28 6.4
06_03_1332 - 29403320-29407804 28 6.4
06_03_0142 + 17208577-17209485,17209578-17210195 28 8.5
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 8.5
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 152 bits (368), Expect = 3e-37
Identities = 72/85 (84%), Positives = 78/85 (91%)
Frame = +1
Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 432
+RFRKAQ PIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIIN
Sbjct: 54 KRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIIN 113
Query: 433 SGPREDSTRIGRAGTVRRQAVDVSP 507
SGPRED+TRIG AG VRRQAVD+SP
Sbjct: 114 SGPREDATRIGSAGAVRRQAVDISP 138
Score = 114 bits (274), Expect = 8e-26
Identities = 55/61 (90%), Positives = 60/61 (98%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+N
Sbjct: 139 LRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 198
Query: 687 R 689
R
Sbjct: 199 R 199
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Frame = +2
Query: 125 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYA 250
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYS 52
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 151 bits (366), Expect = 5e-37
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +1
Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 432
+RFRKAQ P+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIIN
Sbjct: 55 KRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIIN 114
Query: 433 SGPREDSTRIGRAGTVRRQAVDVSP 507
SGPRED+TRIG AG VRRQAVD+SP
Sbjct: 115 SGPREDATRIGSAGAVRRQAVDISP 139
Score = 114 bits (274), Expect = 8e-26
Identities = 55/61 (90%), Positives = 60/61 (98%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+N
Sbjct: 140 LRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 199
Query: 687 R 689
R
Sbjct: 200 R 200
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/42 (59%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = +2
Query: 128 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYA 250
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYS 53
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 60 T*PRQAAWLWKPCLYHKPPTF 122
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>05_03_0259 - 11161447-11161706,11161764-11164266
Length = 920
Score = 28.7 bits (61), Expect = 4.9
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Frame = +1
Query: 262 RKAQYPIVERLTNSLMMHGR-NNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 438
RK P V +T +L++ G +G+ A R+VK E ++ E +++ G
Sbjct: 281 RKGLSPNV--VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRG 338
Query: 439 PREDSTRIGRAGTVRRQAVDVSPCAESTKQSGFCAQVHVRLHSEILKQSQSV 594
+D+TR+ +R + V+ +T +G C + ++L++ + V
Sbjct: 339 RMDDATRV--RNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDV 388
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -2
Query: 178 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 11
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 10 *K 5
K
Sbjct: 476 AK 477
>12_02_0611 +
21118777-21119066,21119501-21119594,21119742-21120182,
21120267-21120866
Length = 474
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 355 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPCAESTKQSG 534
++H + + LL NP++ + I + +E +GRAG ++++ + C ES G
Sbjct: 75 IRHGWSMRDLLL--NPIEEVA---IPARGKEKVGEVGRAGAMQKEEIKCFNCGESGHHQG 129
Query: 535 F 537
F
Sbjct: 130 F 130
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 132 SFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHTAFP 263
+FS G T S + FP S Q +YL + GM T P
Sbjct: 1268 AFSIWGCPTFLSSYYSTSLSCFPFPSSLQKMYLSDVRGMETLAP 1311
>06_03_0142 + 17208577-17209485,17209578-17210195
Length = 508
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 314 CIIREFVRRSTIGYWALRKRCVHTCQL 234
CII+E +R T G + L ++C CQ+
Sbjct: 361 CIIKETLRLHTPGPFVLPRKCQEQCQI 387
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 59 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 229
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,261,577
Number of Sequences: 37544
Number of extensions: 401358
Number of successful extensions: 1071
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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