Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00556
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0) 163 1e-40
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 31 0.93
SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 29 2.8
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.8
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 28 6.6
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14) 28 6.6
SB_46571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5) 28 8.7
>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
Length = 272
Score = 163 bits (397), Expect = 1e-40
Identities = 77/85 (90%), Positives = 82/85 (96%)
Frame = +1
Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 432
+RFRKAQ PIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIIN
Sbjct: 127 KRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIIN 186
Query: 433 SGPREDSTRIGRAGTVRRQAVDVSP 507
SGPREDSTRIGRAGTVRRQAVDVSP
Sbjct: 187 SGPREDSTRIGRAGTVRRQAVDVSP 211
Score = 122 bits (294), Expect = 3e-28
Identities = 58/61 (95%), Positives = 61/61 (100%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAIWLLCTGARE+AFRNIK+IAEC+ADELINAAKGSSNSYAIKKKDELERVAKSN
Sbjct: 212 LRRVNQAIWLLCTGARESAFRNIKSIAECLADELINAAKGSSNSYAIKKKDELERVAKSN 271
Query: 687 R 689
R
Sbjct: 272 R 272
Score = 81.0 bits (191), Expect = 9e-16
Identities = 36/57 (63%), Positives = 46/57 (80%)
Frame = +2
Query: 80 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 250
VV + + A ++P+IKLFG+WS DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA
Sbjct: 69 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYA 125
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 80 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 184
VV + + A ++P+IKLFG+WS DVQVSD+SL
Sbjct: 6 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 579 TIAECVADELINAAKGSSNSY--AIKKKDELERVAK 680
T +C+ DEL + +G NSY +K+K+ELER K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457
>SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 427 INSGPREDSTRIGRAGTVRRQA-VDVSPCAE 516
+N PRE+S R+ R G V +QA +D+ PCAE
Sbjct: 16 VNMVPREES-RVTRLGQVGKQAGLDLQPCAE 45
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 143 RWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHSVSVKPSTQ 280
RWSC Q + +++ Y+ KE ++ LP SV+ PS +
Sbjct: 59 RWSCVTYQAKNQAVECYLPGKEPGSRVLPTRQRTRQSSVTYIPSKE 104
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 617 CIN*FICNTLCDCFNISECSLTCTC 543
C+N +C+ C + SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188
>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
Length = 328
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 599 CNTLCDCFNISECSLTCTCAQKPDCLVDSA 510
C C C + C CTC Q C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255
>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
Length = 556
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 119 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 250
IPE L C DV + LQ+++ + +KY YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552
>SB_46571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 376 IHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPCAESTKQSGFCAQVHV 555
I + TGE + +L +AII +G E R T ++++ ++S C ++
Sbjct: 117 IDVATGEGMVFLLASAIIRAGKEEILLRYFGGSTTSLRSIE--------EESASCVSLND 168
Query: 556 RLHSEILKQSQSVL 597
+ EIL+ SQ L
Sbjct: 169 TVSQEILRASQQFL 182
>SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5)
Length = 529
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 389 LEKTLCKYS*LP-LSTLDPVKI---RLGSVVRVQFVVKPLMFHPAPSQPSNLAFVHRCT 553
LEKT YS L+ LDPV+I + GS+ + + V+K ++ + P A VH+ T
Sbjct: 283 LEKTPIAYSVARNLAFLDPVQIVEDKEGSISKFKVVLKKMVEYKRVQMPDCDALVHQYT 341
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,629,834
Number of Sequences: 59808
Number of extensions: 479503
Number of successful extensions: 1300
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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