Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00556
(716 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 166 8e-41
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 166 8e-41
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 166 8e-41
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 166 8e-41
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 163 4e-40
AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5 pr... 113 6e-25
AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5 va... 88 3e-17
AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens ... 30 9.5
AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens ... 30 9.5
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 166 bits (403), Expect = 8e-41
Identities = 80/85 (94%), Positives = 82/85 (96%)
Frame = +1
Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 432
+RFRKAQ PIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIIN
Sbjct: 59 KRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIIN 118
Query: 433 SGPREDSTRIGRAGTVRRQAVDVSP 507
SGPREDSTRIGRAGTVRRQAVDVSP
Sbjct: 119 SGPREDSTRIGRAGTVRRQAVDVSP 143
Score = 125 bits (301), Expect = 2e-28
Identities = 60/61 (98%), Positives = 61/61 (100%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSN
Sbjct: 144 LRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSN 203
Query: 687 R 689
R
Sbjct: 204 R 204
Score = 87.0 bits (206), Expect = 6e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 104 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 250
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYA 57
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 166 bits (403), Expect = 8e-41
Identities = 80/85 (94%), Positives = 82/85 (96%)
Frame = +1
Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 432
+RFRKAQ PIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIIN
Sbjct: 59 KRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIIN 118
Query: 433 SGPREDSTRIGRAGTVRRQAVDVSP 507
SGPREDSTRIGRAGTVRRQAVDVSP
Sbjct: 119 SGPREDSTRIGRAGTVRRQAVDVSP 143
Score = 125 bits (301), Expect = 2e-28
Identities = 60/61 (98%), Positives = 61/61 (100%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSN
Sbjct: 144 LRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSN 203
Query: 687 R 689
R
Sbjct: 204 R 204
Score = 87.0 bits (206), Expect = 6e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 104 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 250
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYA 57
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 166 bits (403), Expect = 8e-41
Identities = 80/85 (94%), Positives = 82/85 (96%)
Frame = +1
Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 432
+RFRKAQ PIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIIN
Sbjct: 59 KRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIIN 118
Query: 433 SGPREDSTRIGRAGTVRRQAVDVSP 507
SGPREDSTRIGRAGTVRRQAVDVSP
Sbjct: 119 SGPREDSTRIGRAGTVRRQAVDVSP 143
Score = 121 bits (292), Expect = 2e-27
Identities = 58/61 (95%), Positives = 60/61 (98%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSN YAIKK+DELERVAKSN
Sbjct: 144 LRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNFYAIKKRDELERVAKSN 203
Query: 687 R 689
R
Sbjct: 204 R 204
Score = 87.0 bits (206), Expect = 6e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 104 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 250
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYA 57
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 166 bits (403), Expect = 8e-41
Identities = 80/85 (94%), Positives = 82/85 (96%)
Frame = +1
Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 432
+RFRKAQ PIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIIN
Sbjct: 59 KRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIIN 118
Query: 433 SGPREDSTRIGRAGTVRRQAVDVSP 507
SGPREDSTRIGRAGTVRRQAVDVSP
Sbjct: 119 SGPREDSTRIGRAGTVRRQAVDVSP 143
Score = 125 bits (301), Expect = 2e-28
Identities = 60/61 (98%), Positives = 61/61 (100%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSN
Sbjct: 144 LRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSN 203
Query: 687 R 689
R
Sbjct: 204 R 204
Score = 87.0 bits (206), Expect = 6e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 104 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 250
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYA 57
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 163 bits (397), Expect = 4e-40
Identities = 79/83 (95%), Positives = 80/83 (96%)
Frame = +1
Query: 259 FRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 438
FRKAQ PIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 439 PREDSTRIGRAGTVRRQAVDVSP 507
PREDSTRIGRAGTVRRQAVDVSP
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSP 143
Score = 125 bits (301), Expect = 2e-28
Identities = 60/61 (98%), Positives = 61/61 (100%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSN
Sbjct: 144 LRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSN 203
Query: 687 R 689
R
Sbjct: 204 R 204
Score = 87.0 bits (206), Expect = 6e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 104 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 250
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYA 57
>AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5
protein.
Length = 55
Score = 113 bits (272), Expect = 6e-25
Identities = 54/55 (98%), Positives = 55/55 (100%)
Frame = +3
Query: 525 AIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 689
AIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 1 AIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 55
>AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5
variant protein.
Length = 107
Score = 87.8 bits (208), Expect = 3e-17
Identities = 44/52 (84%), Positives = 45/52 (86%)
Frame = +1
Query: 268 AQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTA 423
AQ PIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGE L LV A
Sbjct: 1 AQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGEVGLCGLVRA 52
>AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens
cDNA FLJ44741 fis, clone BRACE3027931. ).
Length = 398
Score = 29.9 bits (64), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 159 MCKSLICLCRTTFPLKRSTQNIYLIQLA 242
+CKS C+C +T + ST+ Y QLA
Sbjct: 259 VCKSTYCICNSTHCVCNSTRTAYATQLA 286
>AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens
cDNA FLJ12986 fis, clone NT2RP3000055. ).
Length = 171
Score = 29.9 bits (64), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 159 MCKSLICLCRTTFPLKRSTQNIYLIQLA 242
+CKS C+C +T + ST+ Y QLA
Sbjct: 32 VCKSTYCICNSTHCVCNSTRTAYATQLA 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,023,224
Number of Sequences: 237096
Number of extensions: 2110563
Number of successful extensions: 4485
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4480
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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