Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00556
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   3.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   3.8  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   3.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   3.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = -1

Query: 599 CNTLCDCFNISECSLTCTCAQKPDCLVD 516
           C  LC C +   C    TC     C  D
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYND 770


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRI 354
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRI 354
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRI 354
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRI 354
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRI 354
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 305 ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 338


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 16/75 (21%), Positives = 34/75 (45%)
 Frame = +1

Query: 205 REVRKIFTSFSWQVCTQRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHL 384
           R V+ I   +   +C    +  Q+ +V    N  ++   +  +  M   +++HAFEI  +
Sbjct: 170 RAVKFIIVIWLLALCLAVPQAIQFGVVYENKNGSVI--LDTARCSMKWTLIEHAFEISTM 227

Query: 385 LTGENPLQVLVTAII 429
           L    P+ +++   I
Sbjct: 228 LFFVLPMTIIIVLYI 242


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 182 ETYQRLAHRSNSICRKA*FQECRRLVVKTWFP 87
           + Y+RL H  N I ++  F    RL   T+ P
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFCP 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,119
Number of Sequences: 438
Number of extensions: 3840
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)