Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00556
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 149 1e-36
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 149 1e-36
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 149 1e-36
At2g45590.1 68415.m05669 protein kinase family protein contains ... 34 0.082
At1g69360.1 68414.m07960 expressed protein 30 1.8
At1g59590.1 68414.m06702 expressed protein 28 7.1
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote... 27 9.4
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA... 27 9.4
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 149 bits (362), Expect = 1e-36
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +1
Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 432
+RFRKAQ PIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+N
Sbjct: 62 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVN 121
Query: 433 SGPREDSTRIGRAGTVRRQAVDVSP 507
SGPRED+TRIG AG VRRQAVD+SP
Sbjct: 122 SGPREDATRIGSAGVVRRQAVDISP 146
Score = 114 bits (274), Expect = 6e-26
Identities = 55/61 (90%), Positives = 60/61 (98%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+N
Sbjct: 147 LRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 206
Query: 687 R 689
R
Sbjct: 207 R 207
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +2
Query: 107 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYA 250
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 60
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 149 bits (362), Expect = 1e-36
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +1
Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 432
+RFRKAQ PIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+N
Sbjct: 62 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVN 121
Query: 433 SGPREDSTRIGRAGTVRRQAVDVSP 507
SGPRED+TRIG AG VRRQAVD+SP
Sbjct: 122 SGPREDATRIGSAGVVRRQAVDISP 146
Score = 114 bits (274), Expect = 6e-26
Identities = 55/61 (90%), Positives = 60/61 (98%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+N
Sbjct: 147 LRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 206
Query: 687 R 689
R
Sbjct: 207 R 207
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +2
Query: 107 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYA 250
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 60
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 149 bits (362), Expect = 1e-36
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +1
Query: 253 QRFRKAQYPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIN 432
+RFRKAQ PIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+N
Sbjct: 62 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVN 121
Query: 433 SGPREDSTRIGRAGTVRRQAVDVSP 507
SGPRED+TRIG AG VRRQAVD+SP
Sbjct: 122 SGPREDATRIGSAGVVRRQAVDISP 146
Score = 115 bits (276), Expect = 4e-26
Identities = 56/61 (91%), Positives = 60/61 (98%)
Frame = +3
Query: 507 LRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 686
LRRVNQAI+LL TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+N
Sbjct: 147 LRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 206
Query: 687 R 689
R
Sbjct: 207 R 207
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Frame = +2
Query: 125 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYA 250
E+KLF RWS DV V+D+SL DYI V+ K+A ++PH+AGRY+
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 60
>At2g45590.1 68415.m05669 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 683
Score = 34.3 bits (75), Expect = 0.082
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 153 ATMCKSLICLCRTTFPLKRSTQNIYLIQLAGM----HTAFP*SPVPNRGAPYKLSNDAR 317
A +C ++ LC P+KR T + L+G+ H F SP P G P+K AR
Sbjct: 625 AVLCITIALLCLQRSPVKRPTMKEIVEMLSGVSEPPHLPFEFSPSPPMGFPFKSRKKAR 683
>At1g69360.1 68414.m07960 expressed protein
Length = 896
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 421 AIINSGPREDSTRIGRAGTVRRQAVDVSPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQ 600
A ++ G D +A T RQ +D++ CA + SGFC+ V + L ++ L
Sbjct: 574 ASVSEGVVVDKEEGNKAAT-HRQHIDLNFCASEDEDSGFCSNPRVETKATTLINVEAPLT 632
Query: 601 M 603
+
Sbjct: 633 L 633
>At1g59590.1 68414.m06702 expressed protein
Length = 211
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 621 KGSSNSYAIKKKDELERVAKSNR 689
+GSS SYA+KKKD +++ NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196
>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
low similarity to SP|P24640|LIP3_MORSP Lipase 3
precursor (EC 3.1.1.3) (Triacylglycerol lipase)
{Moraxella sp}; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 328
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 102 YHKPPTFLKSSFSADGVATMCKSLI 176
++KPP ++ S F+ D + MCK +
Sbjct: 191 FYKPPIWIPSCFAMDYIHVMCKDYL 215
>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
family protein low similarity to skinny hedgehog
[Drosophila melanogaster] GI:15420842; contains Pfam
profile PF03062: MBOAT family
Length = 533
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 78 AWLWKPCLYHKPPTFLKSSFSA 143
+W W CL+ P LKS+ SA
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSA 447
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,477,652
Number of Sequences: 28952
Number of extensions: 321709
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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