Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00555
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.5  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   3.3  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   5.8  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    26   5.8  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    26   5.8  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    26   5.8  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    25   7.7  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   7.7  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 4    GFSCLTAIMNSLNKLSVYSKLVPK--NARVISTS 99
            G S LT + N+ N+ S+Y KLV +   A V+STS
Sbjct: 1849 GRSFLTILSNTKNRDSLYQKLVARAPGADVLSTS 1882


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 324 ILQAHNQVLLCVNVLDLHAACN 259
           +L +H +++ CVN ++LH  C+
Sbjct: 149 LLDSHPKIIPCVNQIELHPFCS 170


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 132 EITSSKNRTDKRVTQSNA**QGSNLCSSYTQHKTGFSGQLFK----NYKQHVDL 281
           E  +++N+ D    QSN     S   + YT +   FS QLFK    N ++H +L
Sbjct: 399 ETNTTENQKDNARGQSNKGHGFSTSLNPYTLYFKSFSSQLFKETVGNKRKHENL 452


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 61  KLVPKNARVISTSALLNTDDGWFSKLLVRRIEPTKESHSRMLSDKEVIYALHTHNIRPDS 240
           ++ P++ ++   S L+N  DG         +E   E H   LSD ++I  +H     PD 
Sbjct: 294 QVAPQSIKLDDVSNLINHLDG---------VESVHELHIWQLSDVKLIATVHVCVTLPDD 344

Query: 241 V-DNYLKITSSM 273
             ++Y K+T+ +
Sbjct: 345 KGESYTKLTTDI 356


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 245 STESGLMLCV*RA*ITSLSLSIRLC-DSFVGSILRTSNFE 129
           + ES L  CV +  ++S++ S+RLC   F  S++R+S ++
Sbjct: 496 NVESVLNACVEKYTLSSITCSLRLCLLEFPDSLIRSSFYD 535


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 152 ILRTSNFENHPSSVFNSALVDI 87
           +LRT   +N P S F +A  DI
Sbjct: 180 VLRTGPIQNRPDSTFTAATTDI 201


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 157 PTKESHSRMLSDKEVIYALHTHNIRPDSVDNYLKI 261
           P + SH+   S K  ++ ++ H  RP+  D  L++
Sbjct: 173 PFELSHASTASAKSPLFGMNYHISRPEETDESLRL 207


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 518 GEARSPNNIYEIRSYSLKPGTMIEWGNN 601
           G  +SP  ++E+R Y+ +   ++ +GN+
Sbjct: 7   GRHKSPVKLFEVRLYNAEANVIVLYGNS 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,263
Number of Sequences: 5004
Number of extensions: 63829
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)