Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00555
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750...    29   4.5  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    28   7.9  

>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
            26475149-26475260,26475405-26475463,26475559-26475633,
            26475734-26475832,26476128-26476343,26476426-26476500,
            26476583-26476670,26476757-26476902,26477240-26477347,
            26477417-26478436,26478437-26478715,26479471-26480520,
            26480636-26480692,26480780-26480837,26481379-26481458,
            26481598-26481654,26481764-26481833,26481967-26482202,
            26482341-26482445,26482534-26482680,26482758-26482823,
            26482916-26482979,26484040-26484200,26484308-26484400,
            26484487-26484600,26484684-26484803,26484893-26484976,
            26485061-26485216,26485389-26485811
          Length = 1885

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 542  IYEIRSYSLKPGTMI-EWGNNWARGLTYRRAQNEAFAGYFSQI 667
            IYE RSY +  G ++ E GN++A     RR  +  +AG   Q+
Sbjct: 1188 IYESRSYLVNMGALLEEQGNSYAE--QNRRTNSSTYAGVSQQV 1228


>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = +3

Query: 333 VSVGDMDQALHLFKYVGGFEKIDKAKQLFKQDSSYQLLESERGKMVRSRHLQYLLAFSFG 512
           V +G  D   H FKY     K  +  +L +  ++Y   +S    +V S HL+YL   +  
Sbjct: 719 VLIGQYDS--HFFKYFKDAFKEAQHLRLLQITATYADSDSFLSSLVNSTHLRYLKIVT-- 774

Query: 513 QLEKHGLPTTSTKYDH 560
           +     LP +  KY H
Sbjct: 775 EESGRTLPRSLRKYYH 790


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,293,740
Number of Sequences: 37544
Number of extensions: 384695
Number of successful extensions: 875
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)