Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00555
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27519| Best HMM Match : NIPSNAP (HMM E-Value=5.2e-14)               42   4e-04
SB_38443| Best HMM Match : Lipoprotein_15 (HMM E-Value=0.14)           28   6.1  
SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.1  

>SB_27519| Best HMM Match : NIPSNAP (HMM E-Value=5.2e-14)
          Length = 312

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +2

Query: 470 QVQTSPILASFQLWPAGEARSPNNIYEIRSYSLKPGTMIEWGNNWARGLTYRRAQNEAFA 649
           Q Q + I+ +   +   + +S   IYE+R+Y+LK G   +W + W +GL  R   +    
Sbjct: 211 QRQENLIMKAVPWYEMQKFQSRGGIYELRAYTLKTGKSEQWAHRWLQGLPARCKYSAPVG 270

Query: 650 GYFSQIGRL 676
            + S+IG L
Sbjct: 271 VWMSEIGTL 279



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 318 VGSWTVSVGDMDQALHLFKYVGGFEKIDKAKQLFKQD 428
           VG W   +G ++Q +HL++Y    E++   ++ FK++
Sbjct: 269 VGVWMSEIGTLNQVIHLWQYDSADERVRIRQEAFKEE 305


>SB_38443| Best HMM Match : Lipoprotein_15 (HMM E-Value=0.14)
          Length = 310

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -2

Query: 496 SKYWRCLDLTILPLSLSSNW*LESCLNNCLALSIFSNPPTYLNKCR 359
           SK W  L  TILP +LS++W  +  LNN + L+ F+     LN  R
Sbjct: 181 SKQWALL-ATILPCALSTSW-PKHMLNNGINLACFALFTNRLNAPR 224


>SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1213

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 255  KNYKQHVDLIHSHKAELGCELVGSWTVSVGDMDQALHLFKYVGGFEKIDKAKQLFKQDSS 434
            K  +QH D+ +  K        G W   +   + +   ++  G FE+  K +++  Q  S
Sbjct: 818  KQLRQHHDMQNDLKKWR--TRYGDWDPQLRSAETSFFPWERKGTFERFQKLQEMLGQSKS 875

Query: 435  YQLLESERGKMV 470
            Y   E  R K++
Sbjct: 876  YLTKEGPRRKLL 887


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,759,643
Number of Sequences: 59808
Number of extensions: 478239
Number of successful extensions: 1047
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)