Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00555
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 513 QLEKHGLPTTSTKYD 557
           ++  HGLP ++T+YD
Sbjct: 442 EIPAHGLPPSATRYD 456


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 541 VVGRPCFSSWPKLKASKYW 485
           VVGR   S W KL+   +W
Sbjct: 125 VVGRKKSSGWRKLRNIVHW 143


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 256 KITSSM*I*YIHTKQNLVVSL*DHGQYQLEIWTKLCIYSNMLVDLKKLTRP 408
           KI SS+    IH   N   +  +   Y    + K   Y N +++++++  P
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQIPVP 130


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 495 LAFSFGQLEKHGLPTTSTKYDHT 563
           L + FG  E+      S +YDHT
Sbjct: 44  LDYDFGSDERRQAAMQSGEYDHT 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,588
Number of Sequences: 438
Number of extensions: 4074
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)