Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00555
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38340.1 68417.m05420 RWP-RK domain-containing protein simila...    29   2.2  
At4g12980.1 68417.m02027 auxin-responsive protein, putative simi...    27   8.8  
At1g71410.1 68414.m08247 protein kinase family protein contains ...    27   8.8  

>At4g38340.1 68417.m05420 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 767

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 349 ISPTDTVHDPTSSQPSSALCECI--RSTCC 266
           I+PT TVH P  S PSS+  +     STCC
Sbjct: 590 INPTQTVHVPPKSPPSSSGSQSSSGSSTCC 619


>At4g12980.1 68417.m02027 auxin-responsive protein, putative similar
           to auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 394

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -2

Query: 490 YWRCLDLTILPLSLSSNW*LESCLNNCLALSIFSNPPTYLNKCRAWSISPTDT 332
           Y  CLDL  L   L  ++      N  LA+ +FS PP+      AW+I+P  T
Sbjct: 40  YPHCLDLPDLKAILHYSY---DASNTTLAV-VFSAPPSKPGGWIAWAINPKST 88


>At1g71410.1 68414.m08247 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 909

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 491 LASFQLWPAGEARSPNNIYEIRSYSLKPGTMIEWGNNWARGLTYRRAQNEAFA 649
           L  F  WP      PNN   + S  LK G    + NN   G  ++ A N+ +A
Sbjct: 753 LDPFANWPP----RPNNGASVASTGLKNGAASNFSNNLPGGTHFQTANNDNWA 801


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,122,294
Number of Sequences: 28952
Number of extensions: 323855
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)