Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00554X
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 114 5e-27
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 111 5e-26
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 70 2e-13
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 3e-08
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 29 0.34
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.4
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 4.2
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 5.5
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 5.5
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 5.5
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 5.5
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 7.3
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 24 9.6
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 9.6
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 24 9.6
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 24 9.6
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 114 bits (275), Expect = 5e-27
Identities = 48/79 (60%), Positives = 62/79 (78%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFADLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F ++VPR+++ DLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 400 TIGQEIVHLALDRIRKLAD 456
T+G+E+V D+IR++AD
Sbjct: 109 TVGKELVDEVTDKIRRIAD 127
Score = 96.7 bits (230), Expect = 1e-21
Identities = 42/63 (66%), Positives = 46/63 (73%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 257 TYP 265
P
Sbjct: 61 YVP 63
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 111 bits (267), Expect = 5e-26
Identities = 45/79 (56%), Positives = 62/79 (78%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFADLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F + VPR+++ DLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 400 TIGQEIVHLALDRIRKLAD 456
T+G+E++ L+RIR++AD
Sbjct: 113 TVGKEMIDSVLERIRRMAD 131
Score = 90.6 bits (215), Expect = 1e-19
Identities = 46/68 (67%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 241
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 242 TGAGSTYP 265
TG G P
Sbjct: 60 TGQGKFVP 67
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 69.7 bits (163), Expect = 2e-13
Identities = 30/68 (44%), Positives = 45/68 (66%)
Frame = +1
Query: 253 QHVPRAVFADLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGQEIVHLAL 432
++VPRAV DLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ L
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 433 DRIRKLAD 456
D +R+ A+
Sbjct: 118 DVVRREAE 125
Score = 38.7 bits (86), Expect = 4e-04
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + + GQ G Q+G A W EHG+ G T + N +F+E G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 257 TYP 265
P
Sbjct: 59 YVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 52.4 bits (120), Expect = 3e-08
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Frame = +1
Query: 229 FLQRDRSWQHVPRAVFADLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 402
F Q D + +++PRA+ DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 403 IGQEIVHLALDRIRKLAD 456
+ I +D I + AD
Sbjct: 110 HAERIFEDIMDMIDREAD 127
Score = 48.8 bits (111), Expect = 4e-07
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +2
Query: 80 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 244
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 29.1 bits (62), Expect = 0.34
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +1
Query: 175 WPDAHRQDHRGRRRFFQHFLQR 240
W A R D R RR FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 156 STASSLMARCPQTRPSGAETILSTLSSARP 245
ST SSL + ++PS + T ST SSA P
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 66 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 188
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 130 ITDLDSGLANVYRDALTHFDLSF 62
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.0 bits (52), Expect = 5.5
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 312 ADLINNSRFKIGEDS--TGYVLPAPVSLKKVLKESSP 208
AD+IN SR+ I S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 352 ITGKEDAANNYARGHYTIGQEIVHLAL 432
IT + NN GH T+G + V L+L
Sbjct: 883 ITDFSRSVNNQRNGHLTVGSDAVCLSL 909
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 5.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 276 EDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSG 169
+D T Y+ P P+ + L +++PP +V+ +G P G
Sbjct: 835 KDLTKYLGP-PIYTSQRLYDTTPPGVVMGLGWTPMG 869
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 184 HLAIRLDAVLQAV-KLPAGITDLDSGLANVYRDALTHFDLSF 62
H I+ D L + K + +D GLA YRD TH + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 24.2 bits (50), Expect = 9.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 252 PAPVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPIWTPAWPTCTEMHS 82
P P+ LK + E P L V IW P + +PI TPA+P+ H+
Sbjct: 268 PQPILLKPI--EDGP----LQVRIWNPKLYPSDKA----HRMPIITPAYPSMCATHN 314
>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 128
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -2
Query: 261 YVLPAPVSLKKVLKESSPPPMVLS 190
++ P+ VSLK++L+ + P P+ L+
Sbjct: 3 FLKPSKVSLKRILQGNPPKPIGLT 26
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 175 WPDAHRQDHRGRRRFFQHFL 234
W ++ D GR+RFF FL
Sbjct: 92 WRLKYKLDGEGRKRFFNEFL 111
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 309 DLINNSRFKIGEDSTGYVLPAPVSLKKVLKESSPPPMVLSV 187
D I+ S+ K ++ Y+ P KKV++ S+P +VL +
Sbjct: 120 DTISFSKPKTVDNYPEYIQHLPGFTKKVVQNSNPEILVLCI 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,380
Number of Sequences: 5004
Number of extensions: 38696
Number of successful extensions: 124
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -