Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00553
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   143   1e-35
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   143   1e-35
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    38   0.001
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.37 
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    27   1.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   1.9  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   3.4  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   3.4  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   5.9  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   7.9  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  143 bits (347), Expect = 1e-35
 Identities = 71/84 (84%), Positives = 75/84 (89%)
 Frame = +3

Query: 3   CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDS 182
           C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+   GPREDS
Sbjct: 65  CFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDS 124

Query: 183 TRIGRAGTVRRQAVDVSPLRRVNQ 254
           TRIG AGTVRRQAVDVSPLRRVNQ
Sbjct: 125 TRIGSAGTVRRQAVDVSPLRRVNQ 148



 Score = 93.1 bits (221), Expect = 2e-20
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = +2

Query: 263 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 418
           L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 152 LITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  143 bits (347), Expect = 1e-35
 Identities = 71/84 (84%), Positives = 75/84 (89%)
 Frame = +3

Query: 3   CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDS 182
           C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+   GPREDS
Sbjct: 65  CFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDS 124

Query: 183 TRIGRAGTVRRQAVDVSPLRRVNQ 254
           TRIG AGTVRRQAVDVSPLRRVNQ
Sbjct: 125 TRIGSAGTVRRQAVDVSPLRRVNQ 148



 Score = 93.1 bits (221), Expect = 2e-20
 Identities = 43/52 (82%), Positives = 50/52 (96%)
 Frame = +2

Query: 263 LLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 418
           L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 152 LITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +3

Query: 12  VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 170
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL  AI    P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 71  GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 169
           G TYC  C     L+NW K S S   C  +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 93  AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 245
           + +I HL+TG N   +  T ++N   R D  R+ R+  +  Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 345 QLRVHLTPTPSKRRTSWSVLLNPTV 419
           Q ++H  P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 20  PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 142
           PYK+   +  + W +  G+TY  + +  + L   R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 292 CSLTCTCAQKPDCWLTR 242
           C LT +C Q  D WLT+
Sbjct: 581 CVLTSSCLQNGDVWLTK 597


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 332 ELINAAKGSSNSYAIKKKDELER 400
           E +N+   + NS  ++KKDELE+
Sbjct: 133 EKLNSEISNQNSLILQKKDELEK 155


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 99   EIIHLLTGENPLQVLVTAIINSGPREDSTR 188
            EI  +LTGENP ++   AI+    R  + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,384
Number of Sequences: 5004
Number of extensions: 36967
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)