Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00553
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...   155   1e-38
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419          155   2e-38
03_05_1163 - 30847591-30847663,30847909-30848042,30848443-308484...    28   4.5  
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171...    28   4.5  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    27   5.9  
06_03_0188 - 17691582-17692241                                         27   7.8  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score =  155 bits (377), Expect = 1e-38
 Identities = 73/84 (86%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDS 182
           CPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+
Sbjct: 61  CPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDA 120

Query: 183 TRIGRAGTVRRQAVDVSPLRRVNQ 254
           TRIG AG VRRQAVD+SPLRRVNQ
Sbjct: 121 TRIGSAGAVRRQAVDISPLRRVNQ 144



 Score =  101 bits (241), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 53/54 (98%)
 Frame = +2

Query: 257 IWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 418
           I+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 146 IYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 199


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score =  155 bits (375), Expect = 2e-38
 Identities = 72/84 (85%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDS 182
           CP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+
Sbjct: 62  CPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDA 121

Query: 183 TRIGRAGTVRRQAVDVSPLRRVNQ 254
           TRIG AG VRRQAVD+SPLRRVNQ
Sbjct: 122 TRIGSAGAVRRQAVDISPLRRVNQ 145



 Score =  101 bits (241), Expect = 4e-22
 Identities = 48/54 (88%), Positives = 53/54 (98%)
 Frame = +2

Query: 257 IWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 418
           I+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 147 IYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 200


>03_05_1163 -
           30847591-30847663,30847909-30848042,30848443-30848484,
           30848613-30848654,30849362-30849461,30849605-30849666,
           30851001-30851015,30851098-30851179,30853510-30853694
          Length = 244

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 237 LRRVNQQSGFCAQVHVRLHSEILKQSQ 317
           ++++N Q+ +   V+++ H EIL+QSQ
Sbjct: 88  MQKINHQNNYQEYVNLKAHVEILQQSQ 114


>01_06_1249 -
           35714645-35716003,35716700-35716761,35717007-35717181,
           35717276-35717301,35717917-35717983,35719803-35719945,
           35720337-35720349
          Length = 614

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +3

Query: 174 EDSTRIGRAGTVRRQAVDVSPLRRVNQQSG 263
           E     GRAG  RRQAVD    RR   Q G
Sbjct: 102 EPDGEAGRAGLRRRQAVDEVAARREEPQGG 131


>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
            27020254-27020325,27021008-27021061,27021707-27021856,
            27022206-27022547,27022651-27024684,27024706-27024947,
            27025658-27026235,27026329-27028183,27028533-27028851,
            27028980-27029417
          Length = 2126

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 12   VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 122
            +  L    ++HG  N ++++AV  +K   +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364


>06_03_0188 - 17691582-17692241
          Length = 219

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 198 AGT-VRRQAVDVSPLRRVNQQSGFCAQVHVRLHSEILKQSQSVLQMN*LMQLRVHLTPTP 374
           AGT  RR  V  +P R       +   + + LH     + Q +L +   +  R H TP P
Sbjct: 102 AGTCTRRVIVAAAPPRATPAHDAWL--LILGLHQTHAWRPQLLLSLR--LHWRRHATPWP 157

Query: 375 SKRRTSWSVLL 407
           S  R +WS+ L
Sbjct: 158 SSTRNAWSLSL 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,484,083
Number of Sequences: 37544
Number of extensions: 237296
Number of successful extensions: 557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)