Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00553
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               167   4e-42
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              32   0.21 
SB_46571| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               31   0.49 
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.0  
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)                  27   6.0  
SB_304| Best HMM Match : UPF0154 (HMM E-Value=0.32)                    27   7.9  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  167 bits (406), Expect = 4e-42
 Identities = 78/84 (92%), Positives = 82/84 (97%)
 Frame = +3

Query: 3   CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDS 182
           CPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIINSGPREDS
Sbjct: 134 CPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSGPREDS 193

Query: 183 TRIGRAGTVRRQAVDVSPLRRVNQ 254
           TRIGRAGTVRRQAVDVSPLRRVNQ
Sbjct: 194 TRIGRAGTVRRQAVDVSPLRRVNQ 217



 Score =  109 bits (261), Expect = 2e-24
 Identities = 51/54 (94%), Positives = 54/54 (100%)
 Frame = +2

Query: 257 IWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 418
           IWLLCTGARE+AFRNIK+IAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 219 IWLLCTGARESAFRNIKSIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 272


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 22/73 (30%), Positives = 29/73 (39%)
 Frame = -2

Query: 355 TLSCIN*FICNTLCDCFNISECSLTCTCAQKPDCWLTRRKGETSTA*RRTVPARPILVES 176
           T  C +   C +  +C + SEC  T  CA   +C  TR    T  + R     R    ES
Sbjct: 94  TRECESTSECESTTECESTSECESTSECASTTECESTRECESTKESVRVRQSVRVRQSES 153

Query: 175 SRGPELIMAVTST 137
           +R  E      ST
Sbjct: 154 TRECESTSECEST 166


>SB_46571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +3

Query: 105 IHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQQSGFCAQVHV 284
           I + TGE  + +L +AII +G  E   R     T        + LR + ++S  C  ++ 
Sbjct: 117 IDVATGEGMVFLLASAIIRAGKEEILLRYFGGST--------TSLRSIEEESASCVSLND 168

Query: 285 RLHSEILKQSQSVL 326
            +  EIL+ SQ  L
Sbjct: 169 TVSQEILRASQQFL 182


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 308 TIAECVADELINAAKGSSNSY--AIKKKDELERVAK 409
           T  +C+ DEL +  +G  NSY   +K+K+ELER  K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 346  CIN*FICNTLCDCFNISECSLTCTC 272
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
          Length = 829

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +3

Query: 57  GKKLMAVRIVKHAFEIIHLL---TGENPL--QVLVTAIINSGPREDSTRIGRAGTVRRQA 221
           G++ +A   +   +  + +L   T EN +  + L  A++  G    +  IG  G V  + 
Sbjct: 530 GQQTVADNFLDDIYACVKMLFQGTDENNVHEEFLEPALLARGQEMSAKEIGNNGDVHARE 589

Query: 222 VDVSPLRRVNQQSGFCAQVHVRLHSEILK 308
             V+P+  +  Q     Q HV   ++I+K
Sbjct: 590 DLVNPVSPMRDQKALRKQDHVEKENDIVK 618


>SB_304| Best HMM Match : UPF0154 (HMM E-Value=0.32)
          Length = 701

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 278 HLCTKARLLVDSAQG*NINGLTTNCTRTTDPSRIFTGSRVD 156
           HL   A + +  A+  N NG  T C      SRI  G+R++
Sbjct: 241 HLMALAVVALQVARHVNTNGTDTRCQHEQPNSRITNGNRME 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,382
Number of Sequences: 59808
Number of extensions: 294647
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)