Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00553
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.96 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -2

Query: 328 CNTLCDCFNISECSLTCTCAQKPDCWLTR 242
           C  LC C +   C    TC     C+  R
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYNDR 771


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 81  IVKHAFEIIHLLTGENPLQVLVTAII 158
           +++HAFEI  +L    P+ +++   I
Sbjct: 217 LIEHAFEISTMLFFVLPMTIIIVLYI 242


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 80  YCQTCV*NYSLVNWRKP 130
           +CQ      S + WRKP
Sbjct: 24  FCQPTQRTMSKIQWRKP 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,297
Number of Sequences: 438
Number of extensions: 2531
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)