Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00553
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   153   6e-38
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   153   6e-38
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   153   6e-38
At4g32930.1 68417.m04686 expressed protein predicted protein, Ca...    28   3.8  
At1g59590.1 68414.m06702 expressed protein                             28   3.8  
At3g28770.1 68416.m03591 expressed protein                             27   5.0  
At4g39450.1 68417.m05582 expressed protein                             27   6.6  
At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2...    27   6.6  

>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  153 bits (371), Expect = 6e-38
 Identities = 71/84 (84%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDS 182
           CPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+
Sbjct: 69  CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDA 128

Query: 183 TRIGRAGTVRRQAVDVSPLRRVNQ 254
           TRIG AG VRRQAVD+SPLRRVNQ
Sbjct: 129 TRIGSAGVVRRQAVDISPLRRVNQ 152



 Score =  101 bits (241), Expect = 3e-22
 Identities = 48/54 (88%), Positives = 53/54 (98%)
 Frame = +2

Query: 257 IWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 418
           I+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 154 IFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  153 bits (371), Expect = 6e-38
 Identities = 71/84 (84%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDS 182
           CPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+
Sbjct: 69  CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDA 128

Query: 183 TRIGRAGTVRRQAVDVSPLRRVNQ 254
           TRIG AG VRRQAVD+SPLRRVNQ
Sbjct: 129 TRIGSAGVVRRQAVDISPLRRVNQ 152



 Score =  101 bits (241), Expect = 3e-22
 Identities = 48/54 (88%), Positives = 53/54 (98%)
 Frame = +2

Query: 257 IWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 418
           I+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 154 IFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207


>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  153 bits (371), Expect = 6e-38
 Identities = 71/84 (84%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDS 182
           CPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+
Sbjct: 69  CPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDA 128

Query: 183 TRIGRAGTVRRQAVDVSPLRRVNQ 254
           TRIG AG VRRQAVD+SPLRRVNQ
Sbjct: 129 TRIGSAGVVRRQAVDISPLRRVNQ 152



 Score =  101 bits (243), Expect = 2e-22
 Identities = 49/54 (90%), Positives = 53/54 (98%)
 Frame = +2

Query: 257 IWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 418
           I+LL TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 154 IFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207


>At4g32930.1 68417.m04686 expressed protein predicted protein,
           Caenorhabditis elegans, gb:Z70780
          Length = 167

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/72 (27%), Positives = 30/72 (41%)
 Frame = -2

Query: 328 CNTLCDCFNISECSLTCTCAQKPDCWLTRRKGETSTA*RRTVPARPILVESSRGPELIMA 149
           C TL + F       TC   QK  C    R+G  +    +    RP+ +E S   E    
Sbjct: 49  CVTLNETFTPPGGRGTCHLVQK--CKFCGREGNVTMIPGK---GRPLTLEDSEAGEHAPL 103

Query: 148 VTSTCRGFSPVN 113
           +   CRG+ P++
Sbjct: 104 MVFDCRGYEPID 115


>At1g59590.1 68414.m06702 expressed protein
          Length = 211

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 350 KGSSNSYAIKKKDELERVAKSNR 418
           +GSS SYA+KKKD   +++  NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +2

Query: 281  REAAFRNIKTIAECVADEL----INAAKGSSNSYAIKKKDELERVAKSNR*NILLSHLYN 448
            RE   RN K+  + V D      I+  KGS  S   KK ++ E   + N+  I  S    
Sbjct: 881  REEVQRNDKSSTKEVRDFANNMDIDVQKGSGESVKYKKDEKKEGNKEENKDTINTSSKQK 940

Query: 449  KQETEKKKK 475
             ++ +KKKK
Sbjct: 941  GKDKKKKKK 949


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 254 TIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 367
           TIWL  T ARE +   +  I   +A E I AA  S+NS
Sbjct: 419 TIWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455


>At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 783

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 166 PELIMAVTSTCRGFSPVNK*IISNACLTIRTAISFLPLFRPC 41
           P+L++ +      F+P+N   I  AC+ + + + +L L +PC
Sbjct: 3   PKLLLCLPQGDELFNPLNTMFIQMACILVFSQLFYL-LLKPC 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,196,836
Number of Sequences: 28952
Number of extensions: 194778
Number of successful extensions: 469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)