Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00552
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   3.1  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    26   3.1  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   4.1  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    25   9.5  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   9.5  

>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 413 LNPQYPHEWSPGLSKLIYT 357
           ++P +PHEW+ G + L+ T
Sbjct: 82  VSPVFPHEWTAGNATLVQT 100


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 343 LGHYLHHTKQLFQL--LL*EVFPQLNLRPNSDYLFWRISKSYQPVVIRIPFLACMSRN 176
           L +Y++  K++  L  L  E+F + N++P    LF     + + ++ R    AC S N
Sbjct: 271 LDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAAACSSEN 328


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 250 LFWRISKSYQPVVIRIPFLACMSRNIFNLVRQS 152
           + WR + +  P++IR  ++   + N+FNL  +S
Sbjct: 378 IHWRKAIAIPPLLIRNTYVTSPTANLFNLEEES 410


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 323 HQTTLSVTSLGGISAIKFT 267
           H T +S+T LG I  I FT
Sbjct: 347 HNTKMSITGLGSIMNIHFT 365


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 123 IFNFEHEVIIRDLFMTN*FYYLRFKYLSTYLQGINLTIKKK 1
           I+   H  I++DL     ++Y ++K +  +LQ  N+   K+
Sbjct: 108 IYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQNDNIPKDKE 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,788
Number of Sequences: 5004
Number of extensions: 40214
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)