Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00552
         (537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22918| Best HMM Match : efhand (HMM E-Value=2.8e-09)                42   2e-04
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)             29   3.2  
SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)                  27   7.3  

>SB_22918| Best HMM Match : efhand (HMM E-Value=2.8e-09)
          Length = 231

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/27 (66%), Positives = 19/27 (70%)
 Frame = +2

Query: 173 DISTHTGQKWDSDDYRLVRFTNAPKQV 253
           D  THTGQ WD  DYR VRFTN  K+V
Sbjct: 112 DTVTHTGQVWDDADYRNVRFTNREKEV 138



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 244 KTSNPNWAVNLIAEIPPKEVTERVVWCDG 330
           K  NPN+++NL+AE PP ++  R V CDG
Sbjct: 136 KEVNPNFSINLVAEEPPIKIKGRSVNCDG 164


>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
          Length = 2232

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 259  NWAVNLIAEIPPKEVTERVVWCDGGSGPEGHPRVYINLDK 378
            NW  ++   +  KEV  +VV+  GG GP+ H      LDK
Sbjct: 926  NWETDVSYGVA-KEVNRKVVFMFGGQGPQWHGMAKELLDK 964


>SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)
          Length = 1171

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 341 GPLPPSHQTTLSVTSLGGISAIKFTAQFGLLVLA 240
           GP        L   SLGG SA+K   +FGLL  A
Sbjct: 475 GPNAAKQVAYLWAKSLGGDSAVKLLTKFGLLEAA 508


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,343,634
Number of Sequences: 59808
Number of extensions: 280250
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)