Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00552
         (537 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456880-1|CAG33161.1|  124|Homo sapiens NDUFS6 protein.               75   1e-13
BC046155-1|AAH46155.1|  124|Homo sapiens NADH dehydrogenase (ubi...    75   1e-13
BC038664-1|AAH38664.1|  124|Homo sapiens NADH dehydrogenase (ubi...    75   1e-13
AF044959-1|AAC27799.1|  124|Homo sapiens NADH:ubiquinone oxidore...    75   1e-13
BC028218-1|AAH28218.1|  149|Homo sapiens ZBP1 protein protein.         32   1.5  

>CR456880-1|CAG33161.1|  124|Homo sapiens NDUFS6 protein.
          Length = 124

 Score = 75.4 bits (177), Expect = 1e-13
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = +1

Query: 244 KTSNPNWAVNLIAEIPPKEVTERVVWCDGGSGPEGHPRVYINLDK-PGDHSCGYCGLRF 417
           K  N N+A++LIAE P  EV  RV+ CDGG G  GHP+VYINLDK     +CGYCGL+F
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQF 119



 Score = 33.5 bits (73), Expect = 0.49
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 THTGQKWDSDDYRLVRFTNAPKQV 253
           THTGQ +D  DYR +RF    K+V
Sbjct: 40  THTGQVYDDKDYRRIRFVGRQKEV 63


>BC046155-1|AAH46155.1|  124|Homo sapiens NADH dehydrogenase
           (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q
           reductas protein.
          Length = 124

 Score = 75.4 bits (177), Expect = 1e-13
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = +1

Query: 244 KTSNPNWAVNLIAEIPPKEVTERVVWCDGGSGPEGHPRVYINLDK-PGDHSCGYCGLRF 417
           K  N N+A++LIAE P  EV  RV+ CDGG G  GHP+VYINLDK     +CGYCGL+F
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQF 119



 Score = 33.5 bits (73), Expect = 0.49
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 THTGQKWDSDDYRLVRFTNAPKQV 253
           THTGQ +D  DYR +RF    K+V
Sbjct: 40  THTGQVYDDKDYRRIRFVGRQKEV 63


>BC038664-1|AAH38664.1|  124|Homo sapiens NADH dehydrogenase
           (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q
           reductas protein.
          Length = 124

 Score = 75.4 bits (177), Expect = 1e-13
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = +1

Query: 244 KTSNPNWAVNLIAEIPPKEVTERVVWCDGGSGPEGHPRVYINLDK-PGDHSCGYCGLRF 417
           K  N N+A++LIAE P  EV  RV+ CDGG G  GHP+VYINLDK     +CGYCGL+F
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQF 119



 Score = 33.5 bits (73), Expect = 0.49
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 THTGQKWDSDDYRLVRFTNAPKQV 253
           THTGQ +D  DYR +RF    K+V
Sbjct: 40  THTGQVYDDKDYRRIRFVGRQKEV 63


>AF044959-1|AAC27799.1|  124|Homo sapiens NADH:ubiquinone
           oxidoreductase NDUFS6 subunit protein.
          Length = 124

 Score = 75.4 bits (177), Expect = 1e-13
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = +1

Query: 244 KTSNPNWAVNLIAEIPPKEVTERVVWCDGGSGPEGHPRVYINLDK-PGDHSCGYCGLRF 417
           K  N N+A++LIAE P  EV  RV+ CDGG G  GHP+VYINLDK     +CGYCGL+F
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQF 119



 Score = 33.5 bits (73), Expect = 0.49
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 THTGQKWDSDDYRLVRFTNAPKQV 253
           THTGQ +D  DYR +RF    K+V
Sbjct: 40  THTGQVYDDKDYRRIRFVGRQKEV 63


>BC028218-1|AAH28218.1|  149|Homo sapiens ZBP1 protein protein.
          Length = 149

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 301 VTERVVWCDGGSGPEGHPRVYINLDKPGDHSCGYCGL 411
           +T    WC GG+ PEG     + L  PG+   G  GL
Sbjct: 60  LTSPATWCLGGTDPEGEGPAELALSSPGNCHPGEAGL 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,791,417
Number of Sequences: 237096
Number of extensions: 1443352
Number of successful extensions: 2658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2654
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)