Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00551
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0151 + 1206555-1206998,1207112-1207543                           33   0.31 
07_01_0245 - 1803170-1803887,1803971-1804641                           30   1.6  
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899     30   2.2  
01_05_0728 + 24686642-24687004,24687935-24688008,24689104-246891...    29   5.0  
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527     28   6.6  
12_01_0856 + 8034181-8035425                                           28   8.7  

>03_01_0151 + 1206555-1206998,1207112-1207543
          Length = 291

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 315 GCRSRSRRAPGSCWGSCDPCRPVADLLVLSVYVVAVTEARIQSP 184
           G   R R A  + + SC PC PVADL +L   V       + +P
Sbjct: 39  GGDGRKRHAAAAAFASCCPCPPVADLDLLESCVTQAAAPPVTAP 82


>07_01_0245 - 1803170-1803887,1803971-1804641
          Length = 462

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 257 VGPLLTSWYCRFTL*QLRKPEYSPPLTILPSPQ*STCSISSPVKGSLSSLY 105
           V P  +  YC+  L +L       PL + PSP+ S     +P  G+L++ +
Sbjct: 31  VHPSTSPCYCKIRLNKLPYQTADAPLLLPPSPEASAAPAPAPATGALAAAF 81


>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
          Length = 712

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -2

Query: 470 ELNTLGLYWHSVDDDHADALVNDSRNVSGAVRNDGRAHERHYFDRVILDVSP 315
           +LN   + W  V+D    AL  D R+  G    DG    R YF R   D  P
Sbjct: 622 KLNRTEISWVEVEDIGGGALFLDYRSSYGVASPDGGNGNRIYFPRYSKDGKP 673


>01_05_0728 +
           24686642-24687004,24687935-24688008,24689104-24689184,
           24689256-24689337,24689596-24689693,24689722-24689860,
           24691259-24691613,24691923-24692173
          Length = 480

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/90 (20%), Positives = 38/90 (42%)
 Frame = -2

Query: 485 QLGSQELNTLGLYWHSVDDDHADALVNDSRNVSGAVRNDGRAHERHYFDRVILDVSPGVA 306
           +L S +   +   W+ +  D    ++    N      ++ +++      RV+L+  PGV 
Sbjct: 155 KLYSTKFTHISPVWYDLKSDGNKLVLEGQHNFDAKWVSELQSNGSLVLPRVVLEAFPGVV 214

Query: 305 VVLVAHRDPVGDLAILVGPLLTSWYCRFTL 216
           ++    RD   DL +       S+ C+F +
Sbjct: 215 LMKKKLRDKAIDLIVNECRYCYSYNCQFVI 244


>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
          Length = 710

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -2

Query: 470 ELNTLGLYWHSVDDDHADALVNDSRNVSGAVRNDGRAHERHYFDRVILDVSP 315
           +L+   + W  V+D    AL  D R   G    DG    R YF R  +D  P
Sbjct: 620 KLDLTKMSWVEVEDIGGGALFLDHRTSHGVGSPDGGHGNRIYFPRYSVDRKP 671


>12_01_0856 + 8034181-8035425
          Length = 414

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 443 HSVDDDHADALVNDSRNVSGAVRNDGRAHERHYFDRVI 330
           HSV+DD  D     +R+V+ A+ N+  A      D V+
Sbjct: 243 HSVEDDRTDVKRQKTRHVNSALANEIDAMNAKLIDTVV 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,051,081
Number of Sequences: 37544
Number of extensions: 400299
Number of successful extensions: 1327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)