Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00551
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)                 30   1.7  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              30   1.7  
SB_25857| Best HMM Match : NAD_binding_1 (HMM E-Value=1.9e-07)         29   5.1  
SB_39790| Best HMM Match : Phage_Gp15 (HMM E-Value=6.1)                28   6.7  
SB_28631| Best HMM Match : Drf_FH1 (HMM E-Value=0.35)                  28   8.9  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        28   8.9  
SB_49518| Best HMM Match : DUF1410 (HMM E-Value=4.7)                   28   8.9  
SB_30468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
          Length = 519

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 13  PHDDWKSAERPN-YLTNVDLEYPYSELPYIAQY-KLLKLPFTGELIEH 150
           P  D     +P+ Y+ +VDL+Y Y  +P   ++ K+LK  + G+L ++
Sbjct: 285 PKSDAVDMMKPDCYMCSVDLKYAYYSVPIAPEHKKILKFSWRGKLYQY 332


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 208 NCYNVNRQYQEVSNGPTRIARSPTGSRCATRT-TATPGL 321
           +C   +  Y  +S+G T   + P GSRC  RT T  P L
Sbjct: 657 SCTQCSPGYYAISSGQTSCIQCPAGSRCPNRTETPVPCL 695


>SB_25857| Best HMM Match : NAD_binding_1 (HMM E-Value=1.9e-07)
          Length = 166

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 473 GCRAEEQASAILPDYELPDYLQEPTMMDSHVAFLNKQLLMDL 598
           GCR   +A   + + EL DY  + T+   HVAF   QLL ++
Sbjct: 63  GCR--HKAQDYIYENELEDYAADGTISRLHVAFSRDQLLPEV 102


>SB_39790| Best HMM Match : Phage_Gp15 (HMM E-Value=6.1)
          Length = 235

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 7   MDPHDDWKSAERPNYLTNVDLEYPYSELPYIAQYKLLKLPFTGELIEHV 153
           + PH   KS  +   L   D EY   +   I QYK +   F   L +H+
Sbjct: 12  LQPHFQAKSPVKLEALKKKDKEYTIDKNAQIVQYKEVHFEFNNSLDDHL 60


>SB_28631| Best HMM Match : Drf_FH1 (HMM E-Value=0.35)
          Length = 240

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 288 PGSCWGSCDPCRPVADLLVLSVYVVAVTEARIQSPVDDTPLTPVVDMLD 142
           PG  + +  P +PV+D + ++   +         P +DTP+ P V  LD
Sbjct: 86  PGESFEAVKP-KPVSDTVAMTTDNLETVAMEDDPPEEDTPVEPSVTRLD 133


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 312 TRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 428
           T    KDDSV  V    + I+P S++ +T  V E  G V
Sbjct: 206 TTTETKDDSVTDVNTKKSAILPESSQAVTDQVEENDGSV 244


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 591 WICCSSTCRPGTTTRQ*LSRSP 656
           W  CS+TC  GT TR  L  +P
Sbjct: 614 WTSCSATCGEGTMTRSRLCDNP 635


>SB_49518| Best HMM Match : DUF1410 (HMM E-Value=4.7)
          Length = 172

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 7   MDPHDDWKSAERPNYLTNVDLEYPYSELPYIAQYKLLKLPFTGELIEHV 153
           + PH   KS  +   L   D EY   +   I QYK +   F   L +H+
Sbjct: 12  LQPHFQAKSPVKLEALKKNDKEYTIDKNAQIVQYKEVHFEFNNSLDDHL 60


>SB_30468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 449 YWHSVDDDHADALVNDSRNVSGAVRNDGRAHERHYFDRV 333
           Y + ++    +  +NDSRN S + +  G+ H  +Y  RV
Sbjct: 139 YVNDIELSPLNGSLNDSRNHSASRKGKGKQHTGNYLSRV 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,868,242
Number of Sequences: 59808
Number of extensions: 453197
Number of successful extensions: 1405
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)