Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00551
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 fami...    29   4.1  
At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containi...    29   4.1  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   4.1  
At5g38150.1 68418.m04598 expressed protein                             28   5.5  
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea...    28   7.2  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    28   7.2  
At4g38310.1 68417.m05414 galactosyl transferase GMA12/MNN10 fami...    27   9.6  

>At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 family
           protein low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 432

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 336 SHP*CKPGCRSRSRRAPGSCWGSCDPCR-PVADLLVLSVYVVAVTEARI 193
           SHP  KPG  +R     GS      PC+ P+ D L+L  +   V  ARI
Sbjct: 96  SHPSFKPGSENRIVMVTGS---QSSPCKNPIGDHLLLRCFKNKVDYARI 141


>At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 591

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 702 CSISSSIIKPTLSSCKDFVIVTALS*SPVDTYLNSRSIR 586
           C + S  + PTLS C   +   +LS +P + +   RS+R
Sbjct: 66  CRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLR 104


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 82  SELPYIAQYKLLKLPFTGELIEHVDY 159
           +E+ +IAQ +LL LP  GEL + ++Y
Sbjct: 22  AEVSFIAQRQLLTLPENGELPDDIEY 47


>At5g38150.1 68418.m04598 expressed protein
          Length = 574

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 282 IPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERV 419
           I  RDE  C  +  +++D VKI  L S  +I  S  ++  I  ER+
Sbjct: 294 IRARDETACLGKI-LREDDVKIEKLNSKILIEKSKLEVVSIAEERI 338


>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to photomorphogenesis repressor PnCOP1
           (GI:11127996) [Ipomoea nil]
          Length = 385

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 9   GSTRRLEVCRAPQLLDQRGPGVSVLRATVHSAVQAAQAPLHWRADRACRLLG*GEY 176
           G  R++   R   LL+ R   V+   + +     A  + L WR D + R++G G+Y
Sbjct: 90  GIARKIRSYRLSSLLESRDDHVTASESYI--CTPAKLSSLKWRPDFSGRVIGSGDY 143


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 318 PGCRSRSRRAPGSC-WGSCDPCRPVAD 241
           P CR    + P  C +G+C PCR + D
Sbjct: 492 PLCRHGQNQKPHKCHYGACPPCRLLCD 518


>At4g38310.1 68417.m05414 galactosyl transferase GMA12/MNN10 family
           protein other predicted proteins Arabidopsis thaliana
          Length = 120

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 336 SHP*CKPGCRSRSRRAPGSCWGSCDPCR-PVAD-LLVLSVYVVAVTEARI 193
           SHP  KPG  +R     GS      PC+ P+ D LL+L  +   V  ARI
Sbjct: 37  SHPSFKPGSENRILMVTGS---QSSPCKNPIGDHLLLLRCFKNKVDYARI 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,790,199
Number of Sequences: 28952
Number of extensions: 300713
Number of successful extensions: 1006
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)