Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00549
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   5.2  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   6.9  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 698 TSSSSINDKLNNLSTPNTNFPSVYSTIDL 612
           +SS S+ +  ++LSTP+T  P+  S++ L
Sbjct: 525 SSSLSLTNAKSSLSTPSTTIPTSNSSVSL 553


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 258 INSNEDIINRLPRAFTARDKLENKCRGLS*IVPGYIFISHLGS*RIV*N 404
           + +++ ++ RL    ++ D L+N+   LS I+P  IF   L + RI  N
Sbjct: 173 LKNSKKVVPRLNTVNSSLDFLQNRTPRLSSILPDEIFTKRLPNLRIFSN 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,320
Number of Sequences: 5004
Number of extensions: 58412
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)