Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00549
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1196 + 28316186-28316290,28317529-28317633,28317725-283177...    29   5.4  

>06_03_1196 +
           28316186-28316290,28317529-28317633,28317725-28317796,
           28318023-28318259,28318608-28318718,28318810-28318923,
           28319272-28319373,28320238-28320306,28320447-28320553,
           28321128-28321224,28321347-28321466,28321663-28321847,
           28322065-28322353
          Length = 570

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 195 YMFAMFYLWSIIKTTYNDT*NINSNED 275
           YM   F  WS++KTTYN   N NS+ D
Sbjct: 476 YMRPNFEYWSMVKTTYN---NYNSDVD 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,523,143
Number of Sequences: 37544
Number of extensions: 342847
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)