Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00549
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   5.5  
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 193 PICLLCFTSGQLLRLHTMIHR 255
           P+C  CF+   LL+ H++IH+
Sbjct: 780 PVCKKCFSRASLLKQHSVIHQ 800


>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 377 VRYKNITWNDLAQSSAFIFKFISCC 303
           VR  ++ W D+   + F+F F+ CC
Sbjct: 2   VRRGSVIWCDVRHVACFLFVFLECC 26


>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 591 KVNRNFYDIINYYIHKYYSEYLHCS*FLFTI-RYNA 487
           +VN  +Y+  +YYIH  Y +Y   S + +TI  YN+
Sbjct: 59  RVNTQYYNTSSYYIHLNYKDYE--SDYFYTIGSYNS 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,707,738
Number of Sequences: 59808
Number of extensions: 398861
Number of successful extensions: 811
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)