Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00549
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 582 RNFYDIINYYIHKYYSEYLH 523
           +N   +INY + K   EY+H
Sbjct: 518 KNVSHVINYDLPKGIDEYVH 537


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 216 LWSIIKTTYNDT*NINSNEDIINRLPRAFTARDK 317
           LW  I+ TY  T +I+   D+   L     A +K
Sbjct: 58  LWRWIRLTYGQTNHISLTLDLEYELVENLQANEK 91


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 216 LWSIIKTTYNDT*NINSNEDIINRLPRAFTARDK 317
           LW  I+ TY  T +I+   D+   L     A +K
Sbjct: 96  LWRWIRLTYGQTNHISLTLDLEYELVENLQANEK 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,001
Number of Sequences: 438
Number of extensions: 4615
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)