Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00549
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52750.1 68416.m05812 chloroplast division protein, putative ...    30   1.9  
At4g01690.2 68417.m00220 protoporphyrinogen oxidase (PPOX) ident...    29   4.5  
At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX) ident...    29   4.5  
At1g64430.1 68414.m07302 expressed protein                             29   4.5  
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ...    28   5.9  

>At3g52750.1 68416.m05812 chloroplast division protein, putative
           strong similarity to plastid division protein FtsZ
           [Arabidopsis thaliana] GI:14195704, chloroplast division
           protein AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809
          Length = 473

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 725 VLMRKPR*KTSSSSINDKLNNLSTPNT 645
           + M  PR +TSS  I + L+ LSTPNT
Sbjct: 85  ISMLNPRKETSSVPITEDLDELSTPNT 111


>At4g01690.2 68417.m00220 protoporphyrinogen oxidase (PPOX)
           identical to SP|P55826
          Length = 506

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 40  SRCLRALLDEITNRLSSLYTPPPFFFWVSY-RPPLSLKCPQGGVIAHFGKGWP 195
           S  LR L +   N LS LY PP     +SY +  +  +C   G +  FG+  P
Sbjct: 343 SGLLRPLSESAANALSKLYYPPVAAVSISYPKEAIRTECLIDGELKGFGQLHP 395


>At4g01690.1 68417.m00219 protoporphyrinogen oxidase (PPOX)
           identical to SP|P55826
          Length = 537

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 40  SRCLRALLDEITNRLSSLYTPPPFFFWVSY-RPPLSLKCPQGGVIAHFGKGWP 195
           S  LR L +   N LS LY PP     +SY +  +  +C   G +  FG+  P
Sbjct: 343 SGLLRPLSESAANALSKLYYPPVAAVSISYPKEAIRTECLIDGELKGFGQLHP 395


>At1g64430.1 68414.m07302 expressed protein
          Length = 559

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/82 (29%), Positives = 37/82 (45%)
 Frame = +3

Query: 285 RLPRAFTARDKLENKCRGLS*IVPGYIFISHLGS*RIV*NEQRLASIAQHLINNTKNIH* 464
           R  R    R+ LEN  +G   ++  Y  IS +    +  +   LA+ A   +NNT+NI  
Sbjct: 470 RRTRVKKVRESLENSIKGKIDLIDSYARISSMIEIEVEMDSDVLAAEA---VNNTENIAQ 526

Query: 465 SITRLMNKHCTEW*IRIMNSAN 530
            I ++M     E   +I   AN
Sbjct: 527 QIEQIMELENLEEKWKIQAEAN 548


>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 314

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 193 PICLLCFTSGQLLRLHTMIHRTLIQM-RI*SIDYLVLSQHEINLK 324
           PIC   FTSGQ L  H   H + I   R  S+  +V  + E+++K
Sbjct: 246 PICFRVFTSGQALGGHKRSHGSNIGAGRGLSVSQIVQIEEEVSVK 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,569,113
Number of Sequences: 28952
Number of extensions: 287485
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)