Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00547
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    36   3e-04
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    28   0.075

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +1

Query: 34  LVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENV---LLIRQLIDEALGEYACQA 204
           + L C   G+P+P   WY+ + G     + TL +  + V   L+IR+   E  G+Y C  
Sbjct: 250 VALLCPAQGFPSPSFRWYKFVEGTTRKQAVTLNDRVKQVAGTLIIREAKVEDSGKYLCVV 309

Query: 205 YNGEG 219
            N  G
Sbjct: 310 NNSVG 314



 Score = 34.3 bits (75), Expect = 9e-04
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +1

Query: 34   LVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENVLLIRQLIDEALGEYACQAYNG 213
            + L CL  G P P I W   + G     S  + +  +  L IR +     GEY+C   N 
Sbjct: 1324 VTLPCLAVGLPPPVITW--KIKGVQFTTSDKIRQQPDGSLFIRDVSRNNAGEYSCHVEND 1381

Query: 214  EG 219
             G
Sbjct: 1382 YG 1383



 Score = 30.3 bits (65), Expect = 0.014
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
 Frame = +1

Query: 25  GRPLVLRCLVYGYPTPEIFWYRGLNGPMVPY-----SSTLYEARENVLLIRQLIDEALGE 189
           G    + C   G+P P + W R        Y     ++   +  +  L I  +     G 
Sbjct: 713 GSDAAVECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIKVEDGTLTINNIQKTNEGY 772

Query: 190 YACQAYNGEGSPATLLMEV 246
           Y C+A NG GS  + ++++
Sbjct: 773 YLCEAVNGIGSGLSAVIQI 791



 Score = 29.5 bits (63), Expect = 0.025
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 13  TGEMGRPLVLRCLVYGYPTPEIFW 84
           T + G  + L+C+  G PTPEI W
Sbjct: 424 TVQPGNSVFLKCIASGNPTPEITW 447



 Score = 28.3 bits (60), Expect = 0.057
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 25  GRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENVLLIRQLIDEALGE--YAC 198
           G  L++ C   G+P   + W R  +G  +P +    +   N  LI + ++ A  +  Y C
Sbjct: 525 GGTLIVHCPFAGHPVDSVVWER--DGRQLPINRK-QKVFINGTLIIENVERASDQATYDC 581

Query: 199 QAYNGEGSPATLLMEVR 249
            A N +G  A   +EV+
Sbjct: 582 VAKNSQGYSARGSLEVQ 598



 Score = 27.5 bits (58), Expect = 0.099
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 37 VLRCLVYGYPTPEIFWYR 90
          V+ C  +G PTP+I W R
Sbjct: 42 VVECSAHGNPTPDIIWVR 59



 Score = 24.2 bits (50), Expect = 0.92
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +1

Query: 4   RIITGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENVLLIRQLIDEAL 183
           ++ T + GRP    C   G P   I W +  +G  + ++       E VL I  +  E  
Sbjct: 335 QVQTIDFGRPATFTCNFEGNPIKTISWLK--DGHPIDHN-------EAVLRIESVRKEDK 385

Query: 184 GEYACQAYNGEGS 222
           G Y C   N + S
Sbjct: 386 GMYQCFIRNDQES 398


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 27.9 bits (59), Expect = 0.075
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 316 WTPSPGRDTRYLLSEGVSSCFTPEPPSVTWP 224
           WT S    T      G + CFT E P VT P
Sbjct: 686 WTSSDNPCTTCFCENGNNKCFTMECPQVTCP 716


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,302
Number of Sequences: 336
Number of extensions: 3231
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)