Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00547
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   2.3  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.0  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    26   5.2  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    26   5.2  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    26   5.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.9  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 628 SDRHSAYRQTGNTSSTYPYVVSGRD-LDAIFG 536
           SDR S+Y    N +ST P +VS    L AI G
Sbjct: 60  SDRASSYANANNVNSTQPQLVSSEQALLAILG 91


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 413 SPVYRAGVDKDIVGAPDADRGRRTESALRSGWYPQ 517
           SP+  +  +K++  AP  ++ RRT S L +G YP+
Sbjct: 344 SPLDHSSAEKEMQKAPAKNKRRRTGS-LETGLYPK 377


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
          subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 25 GRPLVLRCLVYGYP 66
          GRP  + CLVYG+P
Sbjct: 52 GRPWSISCLVYGFP 65


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 612 RIVRRETLVPLIHMLSPDAILTPSLDQYTFSGCGYHPLRR 493
           +I RR TL+ LI        L  ++      GC  HPL R
Sbjct: 184 KIKRRGTLISLIFAFQGFGTLAGAIVTIILLGCFEHPLNR 223


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 524 NVYWSKDGVKIASG 565
           +V WS+DG K+ASG
Sbjct: 79  SVNWSRDGTKVASG 92


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 612 RIVRRETLVPLIHMLSPDAILTPSLDQYTFSGCGYHPLRRADSVRR 475
           ++ RR TL+ LI        L  ++      GC  HPL R    R+
Sbjct: 184 KLNRRGTLISLIFAFQGFGTLAGAIVTIILLGCFEHPLNREGHYRK 229


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 338 RRVHYPHVDPLAGP 297
           +RVH+  VDPL GP
Sbjct: 856 KRVHWQRVDPLPGP 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,350
Number of Sequences: 5004
Number of extensions: 48656
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)