Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00547
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376... 29 2.3
04_04_1050 + 30419673-30419789,30419882-30419977,30420180-304202... 29 3.1
02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222... 29 3.1
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 28 7.1
04_03_0653 - 18429736-18431379 28 7.1
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 28 7.1
12_02_0686 - 22076741-22077085 27 9.4
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 27 9.4
11_01_0479 - 3695245-3696588,3696705-3696965 27 9.4
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942... 27 9.4
02_05_0622 + 30437533-30437577,30437694-30438177,30438301-304383... 27 9.4
>11_01_0487 -
3763233-3763733,3763827-3764279,3765270-3765392,
3765822-3766122,3766283-3766644,3767117-3767713,
3768323-3769447
Length = 1153
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 1 KRIITGEMGRPLVLRCLVYGYPTPEI 78
KR E+G P+VLRC Y P E+
Sbjct: 887 KRAFRAELGEPVVLRCQPYKIPLAEL 912
>04_04_1050 +
30419673-30419789,30419882-30419977,30420180-30420264,
30420352-30420386,30420479-30420544,30420646-30420686,
30420818-30420933,30421101-30421207,30421354-30421491,
30421610-30421744,30421888-30421998
Length = 348
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 155 RRTFSLASYNVLLYGTMGPLSPLYQKISGVGYPYTRQR 42
R T S Y V L T+ LS L QKI+ Y Y +Q+
Sbjct: 303 RETVSRTDYEVDLITTLTKLSSLGQKINYEAYTYPKQK 340
>02_05_1042 +
33718988-33720112,33720709-33721305,33721862-33722223,
33722383-33722683,33723149-33723271,33723535-33723990,
33724102-33724602
Length = 1154
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 1 KRIITGEMGRPLVLRCLVYGYPTPEI 78
KR + E+G P+VLRC Y P E+
Sbjct: 888 KRSLRPELGEPVVLRCQPYKIPLAEL 913
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +3
Query: 168 DRRGARGIRV---SSIQRRRKPGHVTDGGSGVKQDD 266
DRRGA GIR S RRR+ GHV G + D
Sbjct: 18 DRRGADGIRRAEGSGGWRRRRDGHVARARCGAGEPD 53
>04_03_0653 - 18429736-18431379
Length = 547
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 277 SEGVSSCFTPEPPSVTWPGFLLRCMLDTRIPRAPRRSVVLLEERFLWLRTMYC--CMAPW 104
S VS+CF P P + L + +L PR P + + LR ++ C APW
Sbjct: 208 SLAVSNCFLPPPSELRHYAALTKLVLQDTHPRTPLAFYRQVLDACPRLRALHLRRCGAPW 267
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 132 RSQRKRSSNKTTDRRGARGIRVSSIQRRRKPGHVTDGGSGVKQD 263
RS R RSS+ + RRG S++R G GG+G +++
Sbjct: 3 RSSRHRSSSHRSHRRG------GSVERSESEGDEAGGGAGAREE 40
>12_02_0686 - 22076741-22077085
Length = 114
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 177 GARGIRVSSIQRRRKPGHVTDGGS--GVK-QDDTPSDNKYLVSRPGEG 311
GAR R + I+R RKP +G S GV+ Q + P D K SR EG
Sbjct: 34 GARLRRENPIRRPRKPAEPEEGSSLPGVRSQPEGPGDPK-AQSRASEG 80
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 240 GGSGVKQDDTPS--DNKYLVSRPGEGVHVR 323
GGSGVKQ TPS DNK L+ R G VR
Sbjct: 215 GGSGVKQPATPSSEDNK-LLKRLSIGPKVR 243
>11_01_0479 - 3695245-3696588,3696705-3696965
Length = 534
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 204 IQRRRKPGHVTDGGSGVKQ---DDTPSDNKYLVSRPGE 308
++RRR+ G + VK+ DDTP D + +V R GE
Sbjct: 128 LRRRRRDGELVVAELTVKKGDTDDTPEDAELVVLRSGE 165
>09_04_0747 +
19892090-19893304,19893471-19893602,19894168-19894215,
19894697-19894766,19894936-19894963,19896021-19896519
Length = 663
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 114 WHHGTVKSSVPEDFRGRVSVHEAAQDERSAHLPRYY 7
WHH + + ++ GR+ + AA ++ + + PR Y
Sbjct: 238 WHHAVMSFDLNKESFGRIQLPTAALEDSAFYGPRRY 273
>02_05_0622 +
30437533-30437577,30437694-30438177,30438301-30438354,
30438565-30438789,30438891-30438943,30439591-30439714,
30439823-30440077,30440171-30440517,30440661-30441266,
30441504-30441546,30441624-30441757
Length = 789
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 135 FVQCTAVWHHGTVKSSVPEDFRGRVSVH 52
F+ VWH+GT+K DF+ +VSV+
Sbjct: 479 FMIVMCVWHYGTIK-KYEFDFQNKVSVN 505
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,060,675
Number of Sequences: 37544
Number of extensions: 390447
Number of successful extensions: 1369
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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