Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00547
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain...    33   0.21 
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain...    33   0.21 
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain...    33   0.21 
At1g44760.1 68414.m05128 universal stress protein (USP) family p...    29   3.4  
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ...    28   6.0  
At1g42460.1 68414.m04896 Ulp1 protease family protein contains P...    28   6.0  
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica...    28   6.0  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    27   7.9  

>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to Af10-protein (GI:1724114) [Avena fatua]
          Length = 895

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 132 RSQRKRSSNKTTDRRGARGIRVSSIQRRRKPGHVTDGGSGVKQDDTPSDNK 284
           R    R  +++ D  G+RG   SS + R   GH +  GSG + DD   D +
Sbjct: 226 RDDDYRGRSRSVDNYGSRGR--SSEREREDDGHSSSRGSGARADDNSQDGR 274


>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to Af10-protein (GI:1724114) [Avena fatua]
          Length = 895

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 132 RSQRKRSSNKTTDRRGARGIRVSSIQRRRKPGHVTDGGSGVKQDDTPSDNK 284
           R    R  +++ D  G+RG   SS + R   GH +  GSG + DD   D +
Sbjct: 226 RDDDYRGRSRSVDNYGSRGR--SSEREREDDGHSSSRGSGARADDNSQDGR 274


>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to Af10-protein (GI:1724114) [Avena fatua]
          Length = 895

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 132 RSQRKRSSNKTTDRRGARGIRVSSIQRRRKPGHVTDGGSGVKQDDTPSDNK 284
           R    R  +++ D  G+RG   SS + R   GH +  GSG + DD   D +
Sbjct: 226 RDDDYRGRSRSVDNYGSRGR--SSEREREDDGHSSSRGSGARADDNSQDGR 274


>At1g44760.1 68414.m05128 universal stress protein (USP) family
           protein contains Pfam profile PF00582: universal stress
           protein family
          Length = 213

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 609 IVRRETLVPLIHMLSPDAILTPSLDQYTFSGC 514
           +  +  LV L+H++SPD   TPSL Q   S C
Sbjct: 86  LTNKGDLVTLLHVVSPDDEATPSLAQSLGSLC 117


>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 649

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 109 VPYSSTLYEARENVLLIRQLIDEALGEYACQAYNG 213
           + ++S+L + + +  + RQ +D   G Y C A NG
Sbjct: 290 ISFTSSLLKGKWSCGVCRQEVDRKYGAYTCNACNG 324


>At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 762

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 61  YPTPEIFWYRGLNGPMVPYSSTLYEARENVLLIRQLID 174
           YP  +    RG  G  +PY STL+   E+V + R  +D
Sbjct: 104 YPKVQKKKKRGTGGKQMPYYSTLFGLEEDVTVERAHLD 141


>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
           to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
           GI:21427461; contains Pfam profile PF00022: Actin
          Length = 427

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -3

Query: 150 NVFSGFVQCTAVWHHGTVKSSVPEDF 73
           NV S  VQ  AVW  G+V SS PE F
Sbjct: 375 NVVSHPVQRFAVWFGGSVLSSTPEFF 400


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
           identical to ubiquitin-protein ligase 2 [Arabidopsis
           thaliana] GI:7108523; E3, HECT-domain protein family;
           similar to ubiquitin-protein ligase 2 GI:7108523 from
           [Arabidopsis thaliana]
          Length = 3658

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = +1

Query: 73  EIFWYRGLNGP-----MVPYSSTLYEARENVLLIRQLIDEALGEYACQAYNGEGSPATLL 237
           EI    G NGP      +PYS  L      +LL   L   +LG YA    N  GS  +LL
Sbjct: 462 EIVCCSGSNGPEDDTEQLPYSEALISYHRRLLLKALLRAISLGTYAPGNTNLYGSEESLL 521

Query: 238 ME 243
            E
Sbjct: 522 PE 523


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,644,376
Number of Sequences: 28952
Number of extensions: 275294
Number of successful extensions: 934
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)