Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00545
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 235 3e-62
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 234 5e-62
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 234 5e-62
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 232 1e-61
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 232 1e-61
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 232 1e-61
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 230 8e-61
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 230 8e-61
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 229 2e-60
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 205 3e-53
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 195 3e-50
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 189 2e-48
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 121 4e-28
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 97 1e-20
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 85 4e-17
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 63 1e-10
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 63 2e-10
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 60 1e-09
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 49 3e-06
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.10
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 31 0.74
At2g35700.1 68415.m04378 AP2 domain-containing transcription fac... 31 0.98
At1g17540.1 68414.m02157 protein kinase-related similar to serin... 29 2.3
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 29 3.0
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 29 3.9
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family... 29 3.9
At1g16690.2 68414.m01999 transcription factor-related similar to... 29 3.9
At1g16690.1 68414.m01998 transcription factor-related similar to... 29 3.9
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 28 5.2
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 6.9
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 28 6.9
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 9.1
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 235 bits (574), Expect = 3e-62
Identities = 119/150 (79%), Positives = 125/150 (83%), Gaps = 1/150 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 117
Query: 434 REKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPTPCPSTKDTHSPHA 610
REKMTQIMFETFNTPAMYVAIQAVL + + VS T P + PHA
Sbjct: 118 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT-VPIYEGYALPHA 176
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
ILRLDLAGRDLTDYLMKILTERGYSFTT+A
Sbjct: 177 ILRLDLAGRDLTDYLMKILTERGYSFTTSA 206
Score = 99 bits (238), Expect = 1e-21
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 234 bits (572), Expect = 5e-62
Identities = 119/150 (79%), Positives = 124/150 (82%), Gaps = 1/150 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 117
Query: 434 REKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPTPCPSTKDTHSPHA 610
REKMTQIMFETFNTPAMYVAIQAVL + + VS T P + PHA
Sbjct: 118 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT-VPIYEGYALPHA 176
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
ILRLDLAGRDLTD+LMKILTERGYSFTTTA
Sbjct: 177 ILRLDLAGRDLTDHLMKILTERGYSFTTTA 206
Score = 99 bits (238), Expect = 1e-21
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 234 bits (572), Expect = 5e-62
Identities = 119/150 (79%), Positives = 124/150 (82%), Gaps = 1/150 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 117
Query: 434 REKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPTPCPSTKDTHSPHA 610
REKMTQIMFETFNTPAMYVAIQAVL + + VS T P + PHA
Sbjct: 118 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT-VPIYEGYALPHA 176
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
ILRLDLAGRDLTD+LMKILTERGYSFTTTA
Sbjct: 177 ILRLDLAGRDLTDHLMKILTERGYSFTTTA 206
Score = 99 bits (238), Expect = 1e-21
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 232 bits (568), Expect = 1e-61
Identities = 116/150 (77%), Positives = 124/150 (82%), Gaps = 1/150 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKAN
Sbjct: 58 DEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKAN 117
Query: 434 REKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPTPCPSTKDTHSPHA 610
REKMTQIMFETFN+PAMYVAIQAVL + + VS T P + PHA
Sbjct: 118 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT-VPIYEGFSLPHA 176
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
ILRLDLAGRDLTDYLMKILTERGY FTTTA
Sbjct: 177 ILRLDLAGRDLTDYLMKILTERGYMFTTTA 206
Score = 95.5 bits (227), Expect = 3e-20
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVG ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 232 bits (568), Expect = 1e-61
Identities = 116/150 (77%), Positives = 124/150 (82%), Gaps = 1/150 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKAN
Sbjct: 58 DEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKAN 117
Query: 434 REKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPTPCPSTKDTHSPHA 610
REKMTQIMFETFN+PAMYVAIQAVL + + VS T P + PHA
Sbjct: 118 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT-VPIYEGFSLPHA 176
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
ILRLDLAGRDLTDYLMKILTERGY FTTTA
Sbjct: 177 ILRLDLAGRDLTDYLMKILTERGYMFTTTA 206
Score = 95.5 bits (227), Expect = 3e-20
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVG ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 232 bits (568), Expect = 1e-61
Identities = 116/150 (77%), Positives = 124/150 (82%), Gaps = 1/150 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKAN
Sbjct: 58 DEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKAN 117
Query: 434 REKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPTPCPSTKDTHSPHA 610
REKMTQIMFETFN+PAMYVAIQAVL + + VS T P + PHA
Sbjct: 118 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT-VPIYEGFSLPHA 176
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
ILRLDLAGRDLTDYLMKILTERGY FTTTA
Sbjct: 177 ILRLDLAGRDLTDYLMKILTERGYMFTTTA 206
Score = 95.5 bits (227), Expect = 3e-20
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVG ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 230 bits (562), Expect = 8e-61
Identities = 117/150 (78%), Positives = 122/150 (81%), Gaps = 1/150 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKAN
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKAN 117
Query: 434 REKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPTPCPSTKDTHSPHA 610
REKMTQIMFETFN PAMYVAIQAVL + + VS T P + PHA
Sbjct: 118 REKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT-VPIYEGYALPHA 176
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
ILRLDLAGRDLTD LMKILTERGYSFTTTA
Sbjct: 177 ILRLDLAGRDLTDALMKILTERGYSFTTTA 206
Score = 99 bits (238), Expect = 1e-21
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 230 bits (562), Expect = 8e-61
Identities = 117/150 (78%), Positives = 122/150 (81%), Gaps = 1/150 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKAN
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKAN 117
Query: 434 REKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPTPCPSTKDTHSPHA 610
REKMTQIMFETFN PAMYVAIQAVL + + VS T P + PHA
Sbjct: 118 REKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT-VPIYEGYALPHA 176
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
ILRLDLAGRDLTD LMKILTERGYSFTTTA
Sbjct: 177 ILRLDLAGRDLTDALMKILTERGYSFTTTA 206
Score = 99 bits (238), Expect = 1e-21
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 229 bits (559), Expect = 2e-60
Identities = 117/150 (78%), Positives = 122/150 (81%), Gaps = 1/150 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 117
Query: 434 REKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPTPCPSTKDTHSPHA 610
REKMTQIMFETFN PAMYVAIQAVL + + VS T P + PHA
Sbjct: 118 REKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT-VPIYEGYALPHA 176
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
ILRLDLAGRDLTD LMKILTERGY FTTTA
Sbjct: 177 ILRLDLAGRDLTDSLMKILTERGYMFTTTA 206
Score = 99 bits (238), Expect = 1e-21
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 205 bits (500), Expect = 3e-53
Identities = 99/150 (66%), Positives = 119/150 (79%), Gaps = 1/150 (0%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 433
+EAQ++RGIL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+LLTEAPLNPK N
Sbjct: 59 DEAQARRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVN 118
Query: 434 REKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPTPCPSTKDTHSPHA 610
REKMTQIMFE+F P+MY+ IQAVL + + + VS T P + PHA
Sbjct: 119 REKMTQIMFESFAFPSMYIGIQAVLSLYSSGRTTGIVLDSGDGVSHT-VPIYEGYALPHA 177
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
ILRLDLAGRDLT+YL KI+ ERGY++TT+A
Sbjct: 178 ILRLDLAGRDLTEYLTKIMMERGYTYTTSA 207
Score = 94.3 bits (224), Expect = 7e-20
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VG +A+
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQAR 64
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 195 bits (475), Expect = 3e-50
Identities = 101/163 (61%), Positives = 118/163 (72%), Gaps = 1/163 (0%)
Frame = +2
Query: 215 RDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 394
RDG E + E + R ILTLK P+EHGIV NWDDMEKIWH+TFYNELRV PEEHP
Sbjct: 35 RDGLNPNESYV-GEEGHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHP 93
Query: 395 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLRC-TRPVVPPVSCWTPATVSPT 571
VLLTEAP NPKANREKMTQIMFE+F+ PAMYV++Q+VL + V VS T
Sbjct: 94 VLLTEAPYNPKANREKMTQIMFESFDVPAMYVSMQSVLYLYSSGRTTGVVLDLGERVSHT 153
Query: 572 PCPSTKDTHSPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA 700
P + PH ILRLDL GRDLTDYL++I+TERGY++TT+A
Sbjct: 154 -VPVYEGYALPHGILRLDLGGRDLTDYLIEIMTERGYTYTTSA 195
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 254
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVG 46
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 189 bits (460), Expect = 2e-48
Identities = 90/148 (60%), Positives = 110/148 (74%)
Frame = +2
Query: 242 LLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 421
L ++A+++ GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPVLLTEAPLN
Sbjct: 9 LFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPLN 68
Query: 422 PKANREKMTQIMFETFNTPAMYVAIQAVLRCTRPVVPPVSCWTPATVSPTPCPSTKDTHS 601
PKA+REKMTQIMFETF P+MY+ +QA L + P + +
Sbjct: 69 PKADREKMTQIMFETFAVPSMYIGMQAALSLHASGRTTGTVLDSGDGVSYIVPIYEGSAL 128
Query: 602 PHAILRLDLAGRDLTDYLMKILTERGYS 685
PHAILRLDLAGR LT+YLMKI+ ERGY+
Sbjct: 129 PHAILRLDLAGRHLTNYLMKIMMERGYT 156
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 121 bits (292), Expect = 4e-28
Identities = 57/140 (40%), Positives = 80/140 (57%)
Frame = +2
Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 460
L + YP+ +GIV NWDDME +W H FYNEL++ P + +LLT+ PLNP NREKM + MF
Sbjct: 66 LDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKMIETMF 125
Query: 461 ETFNTPAMYVAIQAVLRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPHAILRLDLAGRD 640
E +N +++ IQAVL + P PH R+++AGR
Sbjct: 126 EKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRH 185
Query: 641 LTDYLMKILTERGYSFTTTA 700
+T YL+ +L+ RGY+ TA
Sbjct: 186 ITAYLVDLLSRRGYAMNKTA 205
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVG 254
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVG 56
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 97.1 bits (231), Expect = 1e-20
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Frame = +2
Query: 287 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 466
L YPIEHG V +WD ME+ W +N LR PE+H LLTE+PL P +RE +I+FET
Sbjct: 86 LHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESREYTGEILFET 145
Query: 467 FNTPAMYVAIQAVLRCTRPVVPPVSCWTPATV-----SPTPCPSTKDTHSPHAILRLDLA 631
FN P +Y+A+ +VL T V + P + I + +A
Sbjct: 146 FNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVAEGYVIGSCIKSIPIA 205
Query: 632 GRDLTDYLMKILTERG 679
G+D+T ++ +++ ERG
Sbjct: 206 GKDVTLFIQQLMRERG 221
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 532 TGIVLDSGDGVSHTVPIYEGYAL 600
TG+V+D GDG +H VP+ EGY +
Sbjct: 173 TGVVVDVGDGATHVVPVAEGYVI 195
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 108 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 194
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 85.0 bits (201), Expect = 4e-17
Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Frame = +2
Query: 269 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 448
+R + + PI+ GIV++WD ++ IW H F + L + P EHP+LL E PLN + REK
Sbjct: 85 RRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAA 144
Query: 449 QIMFETFNTPAMYVAIQAVL---RCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPHAILR 619
++MFE + PA+++A VL R V C +T T P A++
Sbjct: 145 ELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGST---TISPVHDGYVLQKAVVS 201
Query: 620 LDLAGRDLTDYLMKILTERG 679
L G LTD L+K L +G
Sbjct: 202 SPLGGEFLTDCLLKSLESKG 221
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 197
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 63.3 bits (147), Expect = 1e-10
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Frame = +2
Query: 287 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 466
++ PI+ G + N D +IW H F + L +AP +LLTEAPL+ + + +++FE
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFED 120
Query: 467 FNTPAMYVA-IQAVLRCTRPVVPPVSCWTPATVSPTPCPSTKDTHS---------PHAIL 616
F ++Y+A Q+++ P S + S TH+ HAI
Sbjct: 121 FGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAIK 180
Query: 617 RLDLAGRDLTDYLMKILTER 676
R+DL G+ T+YL ++++ R
Sbjct: 181 RIDLGGKAFTNYLKELVSYR 200
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 203
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/58 (44%), Positives = 37/58 (63%)
Frame = +2
Query: 269 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 442
+R + + P + GIVT+WD ++ +W H F N L + P EHP+LL E PLN + REK
Sbjct: 79 RRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 197
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 296 PIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFN 472
PIE G++ +WD ME + + Y L E +L T+ PKA RE++ Q+MFETFN
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFN 116
Query: 473 TPAMYVAIQAVL 508
Y + QAVL
Sbjct: 117 VSGFYASEQAVL 128
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 108 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGR 200
ALVVD GS KAG A D +P + PS + R
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR 34
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 49.2 bits (112), Expect = 3e-06
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Frame = +2
Query: 296 PIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 472
P + +V ++ ME I + F + +HP+L+TE NP +R KM +++FET+
Sbjct: 85 PFDSNVVYQFEIMEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMAELLFETYG 144
Query: 473 TPAMYVAIQAVLRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPHAI---------LRLD 625
PA+ + A + + C V CP THS + R +
Sbjct: 145 VPAVAFGVDAAFSYKYNQLHGI-CKKDGIVL---CPGFTTTHSIPFVDGEPIYKGSSRTN 200
Query: 626 LAGRDLTDYLMKILT 670
+ G +TDYL ++L+
Sbjct: 201 IGGYHVTDYLKQLLS 215
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 212
+V+DNG+ + G+AG+ PR VF +IV RPRH+
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHK 55
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -3
Query: 232 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 95
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 409 GSPQPQGQQREDDPDHVR---NIQHARHVRRHPSRAPLY 516
GSP+ +G + E+D D + NI+H + +H + A LY
Sbjct: 91 GSPRVEGDEDEEDIDDIEYEFNIEHEQDKHKHSAEAMLY 129
>At2g35700.1 68415.m04378 AP2 domain-containing transcription
factor, putative pFAM domain (PF00847)
Length = 194
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 557 TVSPTPCPSTKDTHSPHAILRLDLAGRDLTDYLMKI 664
T SP+P P+ +T SP I D A DL D L+ +
Sbjct: 137 TSSPSPSPTVTETSSPAMIALSDDAFSDLPDLLLNV 172
>At1g17540.1 68414.m02157 protein kinase-related similar to
serine/threonine protein kinase Fen [Lycopersicon
esculentum] GI:1809259
Length = 733
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Frame = +1
Query: 415 PQ-PQGQQREDDPDHVRNIQHARHVRRHPSRAPLYASGRTTGIVLDSGDGVSHTVPIYEG 591
PQ PQG P + QH H +HPS + G T+ +SG + P G
Sbjct: 160 PQTPQGPHTPQGPQTPQAPQHPPHPSKHPSM--MSDPGPTSSTSSESG----RSSPALNG 213
Query: 592 YALPPR-HPASGLSRSRPHRLPHEDP 666
PP H L RS L +E P
Sbjct: 214 ELSPPTPHYKPSLYRSSMSELSNEFP 239
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +1
Query: 487 RRHPSRAPLYASGRTTGIVLDSGDGVSHTVPIYEGYALPPRHPASGLSRSRPHRLPHEDP 666
+R + L A+GR + D GD S PIY P R + S + ++
Sbjct: 443 KREAFKNQLLAAGRGLPVADDVGDATSSKRPIYANKKKPSRQKGNDTSVQVEDEVEPQEN 502
Query: 667 HRARL 681
H A L
Sbjct: 503 HAATL 507
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 554 ATVSPTPCPSTKDTHSPHAILRLDLAGRDLTDYLMKILTE 673
++VSP C S +D+ SP + + G DL DYL + T+
Sbjct: 42 SSVSPILCTSHRDSRSPGSDSNASIVG-DLLDYLNESWTQ 80
>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
protein identical to hydroxyproline-rich glycoprotein
[Arabidopsis thaliana] gi|9293881|dbj|BAB01784
Length = 532
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 599 SAYPS*MGTVWETPSPESSTIPVVRPDAYSGARLGW 492
+AYPS TV+ SP P + P +Y G+ +G+
Sbjct: 461 AAYPSPPTTVYSNRSPPYPYSPEIIPGSYQGSPIGY 496
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 442
L++KY + H I + W + +IW L+ P PV T P N REK
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP---PVNDTN-PYNVFRPREK 227
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 442
L++KY + H I + W + +IW L+ P PV T P N REK
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP---PVNDTN-PYNVFRPREK 227
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/78 (29%), Positives = 32/78 (41%)
Frame = +1
Query: 370 ACRPRGTPSPAH*GSPQPQGQQREDDPDHVRNIQHARHVRRHPSRAPLYASGRTTGIVLD 549
AC GT GSP+ +G + +DD D + + + H + A LY TG
Sbjct: 80 ACPQCGTRYKRIKGSPRVEGDEEDDDIDDLEHEFYGMD-PEHVTEAALYYMRLNTG---R 135
Query: 550 SGDGVSHTVPIYEGYALP 603
D VSH G +P
Sbjct: 136 GTDEVSHLYSASPGSEVP 153
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 376 RPRGTPSPA--H*GSPQPQGQQRED-DPDHVRNIQHARHVRRHPSRAPLYASGRT 531
R R +PSP SP P ++R P + RN + RR+ SR+PL GR+
Sbjct: 367 RRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRSPLAKRGRS 421
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 524 VVPPVSCWTPATVSPTPCP-----STKDTHSPH 607
+ PP+SC TP PCP DTH H
Sbjct: 645 IPPPLSCGTPVPSCQLPCPIPQPCGHSDTHGCH 677
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 208 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 86
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,001,405
Number of Sequences: 28952
Number of extensions: 409466
Number of successful extensions: 1410
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -