Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00543
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   124   9e-30
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   124   9e-30
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.59 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.78 
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    27   3.1  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   5.5  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   5.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.5  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   7.3  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   7.3  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   7.3  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   9.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.6  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   9.6  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  124 bits (300), Expect = 9e-30
 Identities = 53/82 (64%), Positives = 71/82 (86%)
 Frame = +2

Query: 17  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 196
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 197 ARVRKNTEARRKGRHCGFGREE 262
            R+RK   A+R GRH G+G+ +
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRK 82



 Score = 88.2 bits (209), Expect = 9e-19
 Identities = 40/83 (48%), Positives = 54/83 (65%)
 Frame = +1

Query: 256 RRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 435
           R+GTA ARMP   +W                + KID+HLYH+LY++AKGN FK+KR L+E
Sbjct: 81  RKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIE 140

Query: 436 YIHRKKAEKARTKMLSDQAEARR 504
           +I R KAE  RTK++ +Q +ARR
Sbjct: 141 HIQRAKAEANRTKLIQEQQDARR 163


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  124 bits (300), Expect = 9e-30
 Identities = 53/82 (64%), Positives = 71/82 (86%)
 Frame = +2

Query: 17  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 196
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 197 ARVRKNTEARRKGRHCGFGREE 262
            R+RK   A+R GRH G+G+ +
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRK 82



 Score = 88.2 bits (209), Expect = 9e-19
 Identities = 40/83 (48%), Positives = 54/83 (65%)
 Frame = +1

Query: 256 RRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 435
           R+GTA ARMP   +W                + KID+HLYH+LY++AKGN FK+KR L+E
Sbjct: 81  RKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIE 140

Query: 436 YIHRKKAEKARTKMLSDQAEARR 504
           +I R KAE  RTK++ +Q +ARR
Sbjct: 141 HIQRAKAEANRTKLIQEQQDARR 163


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 160 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 71
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 139 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 44
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 92  PNEINEIANTNSRQNIRKMIK--DGLVIKKPVAVHSRARVRKN-TEARRKGRHCGFGREE 262
           P+   E   T S++  RK+ +  + L+    V++H  A    + + ARR G    FGR+E
Sbjct: 82  PSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDCSSARRGGELGEFGRDE 141

Query: 263 VQ 268
           +Q
Sbjct: 142 MQ 143


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 510 VKEARKRCEERIAAKKEELLQTFAREDEAALTAKK 614
           V +A+K  EERIA +K E  +  A E+     AKK
Sbjct: 637 VLKAQKEEEERIAQQKREEKRRLAYEESLKRHAKK 671


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 433 EYIHRKKAEKARTKMLSDQAEARRNK*RRHASAARNVLPPRRRN 564
           E I R     + T+M   Q +ARR + RR  +  R  +  +RRN
Sbjct: 510 ETITRSGIAISSTEMDHQQKQARRRRVRRKHAEKRKQMAEKRRN 553


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 455 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 363
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 543 YVPRSACVPPSLIAAGLSLVAKHL 472
           Y+P++  +  S  AAGLSL+A  L
Sbjct: 344 YIPKTETLNDSQFAAGLSLLASEL 367


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 260 LLYQSHSDDPFYVLLCFCGHERGS 189
           ++Y+S   D FY ++ F  H RGS
Sbjct: 828 MVYESIISDDFYSMIRFLVHHRGS 851


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 322 LKPFVFVPIVPSVAYAHWLYLFSTKATVTTLSTCFCVFA 206
           L    +VPI P   +++W    S++A VTT +T F +++
Sbjct: 133 LSDISYVPI-PHKEHSNWPVHCSSQAIVTTSNTTFSIWS 170


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +2

Query: 77  KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 223
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 224 RRKGR 238
           R+  R
Sbjct: 349 RKSLR 353


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 131 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 247
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 20  SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 145
           S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,178
Number of Sequences: 5004
Number of extensions: 51096
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)