Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00543
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              136   2e-32
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)                29   3.3  
SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)                28   5.8  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   7.7  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  136 bits (328), Expect = 2e-32
 Identities = 60/85 (70%), Positives = 73/85 (85%)
 Frame = +2

Query: 8   RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 187
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 188 HSRARVRKNTEARRKGRHCGFGREE 262
           HSRARVRK  EAR KGRH G G+ +
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRK 110



 Score =  129 bits (311), Expect = 2e-30
 Identities = 60/85 (70%), Positives = 67/85 (78%)
 Frame = +1

Query: 256 RRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 435
           R+GTANARMPQK +W                AKKID H+YHSLYMK+KGNVFKNKRVLME
Sbjct: 109 RKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLME 168

Query: 436 YIHRKKAEKARTKMLSDQAEARRNK 510
           YIH+KKAEKAR+K+LSDQAEARRNK
Sbjct: 169 YIHKKKAEKARSKLLSDQAEARRNK 193


>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
          Length = 1578

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 346 FCTSGAIFLKPFVFVPIV--PSVAYAHWLYLFSTKATVTTLSTCFCVFADTSAGVYCYRF 173
           +CT   I+++P         P V ++     +  + TV+T  T    F  T+ G+Y    
Sbjct: 236 YCTKSVIYVRPDEAATFGWDPHVVFSDNGIAYPRQVTVSTPDTAH--FVKTTVGLYKIEN 293

Query: 172 LDDETILDHLTDVL 131
             ++ I+  +TDVL
Sbjct: 294 AKEQVIVPEVTDVL 307


>SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)
          Length = 381

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -2

Query: 323 LKTLCLCTHSSFCGIRALAVPLLYQSHSDDPFYVL---LCFCGHE--RGSVLLQ 177
           L+ LC C HS+  G   L   L Y  HS     +L   LC+ GH    G++LL+
Sbjct: 91  LRALCYCGHSAIVG-TLLLWALCYYGHSAITGTLLLRALCYYGHSAITGTLLLR 143


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 547 PPRRRNCCRPSLEKTKPRLPL 609
           PP  +N  +P ++KTKP  PL
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPL 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,099,126
Number of Sequences: 59808
Number of extensions: 413979
Number of successful extensions: 1328
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)