Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00543
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   122   2e-28
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    38   0.005
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical ...    28   5.1  
AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine re...    28   6.7  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  122 bits (295), Expect = 2e-28
 Identities = 51/80 (63%), Positives = 70/80 (87%)
 Frame = +2

Query: 17  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 196
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 197 ARVRKNTEARRKGRHCGFGR 256
            R R+  EARRKGRH G+G+
Sbjct: 61  FRAREYEEARRKGRHTGYGK 80



 Score =  104 bits (250), Expect = 5e-23
 Identities = 48/85 (56%), Positives = 59/85 (69%)
 Frame = +1

Query: 256 RRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLME 435
           RRGTANARMP+K LW                AKK+D+HLYH LY++AKGN FKNK+ L+E
Sbjct: 81  RRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIE 140

Query: 436 YIHRKKAEKARTKMLSDQAEARRNK 510
           YI +KK E  R K L+DQA+ARR+K
Sbjct: 141 YIFKKKTENKRAKQLADQAQARRDK 165



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 513 KEARKRCEERIAAKKEELLQTFAREDE 593
           KE+RKR EER   K+ ELL+  ++ ++
Sbjct: 167 KESRKRREERQVVKRAELLRKISQSEK 193


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -3

Query: 328 IFLKPFVFVPIVPSVAYAHWLYLFSTKATVTT-LSTCFCVFADTSAGVYCYRFLDDETIL 152
           IF++PF    IV    +  W   F   A +   ++T FC+FAD S   +  R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFADASPAKWT-RLQDDDVAI 460

Query: 151 DHLTDVLSGVGVCDLIDFI 95
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 113  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 247
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 514 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPL 609
           RRHAS     +PP   NC +P+ ++T+  + L
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSL 45


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 561 PPSWRQYVPRSACVPPSLIAAGLSL 487
           P SW QY P+  C+ P  + A  S+
Sbjct: 221 PNSWHQYQPKGTCIQPVTLPASWSI 245


>Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical
           protein F15B9.10 protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 295 VPSVAYAHWLYLFSTKATVTTLSTCFCVF 209
           +PS+  + WL++F     + TL  C C++
Sbjct: 214 LPSILQSKWLWIFVIGIVLPTLCCCCCIY 242


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 125 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 238
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 68   GKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG-RHC 244
            G    W++PN   ++  T  + N+   I   + I K + +    R+  + +  +   R  
Sbjct: 1159 GYDHAWVNPNSKLKLRATLGQCNLASSIVSDMNISKTLCIFESCRLYMSNDLTKDAVRFE 1218

Query: 245  GFGREEVQPMR 277
            G+G ++V P +
Sbjct: 1219 GYGTQKVSPKK 1229


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 535 RNVLPPRRRNCCRPSLEKTKPRLP 606
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical
           protein C13A2.12 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 376 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNK*RRHASAARN 540
           H     A+ N  K + V++   H+KKA      +    A ARRN  +R A AA N
Sbjct: 312 HKKKALARLNALKRQHVVVA--HKKKALARLNALKRKHAVARRNAIQRQARAAAN 364


>AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine
           receptor, class t protein6 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 343 CTSGAIFLKPFVFVPIVPSVAYAHWLYLFSTKATVTTLSTCFCVFADTSAGVYCY 179
           CT G ++L  ++   ++  + Y+   +L+ TK  +   +   CVF  T AG+Y +
Sbjct: 210 CT-GTLYL--YLSYNLLFKLGYSTSTWLYKTKRQIIFQAVILCVFHATVAGLYSF 261


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 365 LSIFLAVLYFRSNFLK 318
           L++ LA++YFRSNF K
Sbjct: 8   LAVILAIIYFRSNFSK 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,149
Number of Sequences: 27780
Number of extensions: 303754
Number of successful extensions: 971
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)