Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00542
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 61 8e-10
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 33 0.33
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 1.7
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 29 4.0
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 5.3
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 7.0
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 9.3
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 28 9.3
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 61.3 bits (142), Expect = 8e-10
Identities = 34/79 (43%), Positives = 47/79 (59%)
Frame = +3
Query: 261 RLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQF 440
RL E F DKK + ++K Y+K L AKL+ ++ E FK N+ K +LG+ K+LQF
Sbjct: 75 RLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQF 130
Query: 441 FTGESMDCDGMVAMMEYRD 497
F GESM DG + Y+D
Sbjct: 131 FVGESMHDDGGLVFAYYKD 149
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Frame = +1
Query: 46 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 216
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V + D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 217 TDSAVESGVDIVLT 258
D VDIV T
Sbjct: 60 VDDQAVKVVDIVDT 73
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 488 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 354
FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 252 PNHRLVETYAFGDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRF 425
P + E G +K TL L++Y+ +V A L+ +Q+E FK +NKV
Sbjct: 1129 PGNPEYELVPGGSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----AL 1183
Query: 426 KELQFFTGESMD 461
K L+ F+ + M+
Sbjct: 1184 KTLRLFSEDEME 1195
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 172 QIEGFNPSAEEADEGTDSAVESGVDIVLTTG*SKHTPSVTRNPTHCTSKTI 324
++E NP+AEE +E + E +I + T + T HC ++ +
Sbjct: 71 EVEDTNPAAEETNETAEEEAEEKPEIKIETAPADFRFPTTNQTRHCFTRYV 121
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 258 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 437
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 438 FFTGE 452
+ E
Sbjct: 237 VLSKE 241
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 360 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 262
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 151 TRAQGDIQIEGFNPSAEEADEGTDSAVES 237
TR+ +Q++GF PSA ++ +G+ + V S
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSS 855
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 82 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIV 252
+FS VDE I +E+ + G+I ++GF G D+AVE ++ V
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,252,524
Number of Sequences: 37544
Number of extensions: 349200
Number of successful extensions: 763
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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